CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES15431

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	EES15431	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34415	Sorghum	peroxisome	92.39	92.14
Os03t0786100-01	Rice	peroxisome	92.12	91.87
TraesCS5B01G426500.1	Wheat	golgi	91.58	91.08
TraesCS5D01G432900.1	Wheat	peroxisome	91.3	90.81
TraesCS5A01G424400.1	Wheat	peroxisome	91.03	90.54
HORVU0Hr1G013900.4	Barley	peroxisome	78.8	88.69
GSMUA_Achr7P07880_001	Banana	peroxisome, plasma membrane, unclear	88.32	88.56
Solyc07g056540.2.1	Tomato	plastid	88.32	87.6
PGSC0003DMT400071115	Potato	cytosol	88.32	87.6
AT3G14420.1	Thale cress	peroxisome	87.23	87.47
KRH43857	Soybean	peroxisome	87.5	86.79
KRH13608	Soybean	nucleus	86.68	85.98
VIT_19s0093g00510.t01	Wine grape	peroxisome	86.14	85.44
AT3G14415.2	Thale cress	peroxisome	85.87	84.72
VIT_10s0003g03830.t01	Wine grape	peroxisome	85.6	84.68
Os08t0198700-01	Rice	vacuole	14.13	74.29
GSMUA_Achr4P22900_001	Banana	peroxisome	30.71	73.38
EES11443	Sorghum	peroxisome	80.71	71.57
EES11447	Sorghum	peroxisome	70.11	70.3
CDY70372	Canola	cytosol, mitochondrion, plastid	22.28	70.09
CDX88442	Canola	cytosol, mitochondrion, plastid	22.28	70.09
OQU90257	Sorghum	peroxisome	61.14	61.31
OQU90259	Sorghum	peroxisome	58.42	58.42
CDY52449	Canola	mitochondrion	33.7	56.88
Bra035032.1-P	Field mustard	mitochondrion	33.7	56.88
CDX86782	Canola	cytosol, peroxisome, plastid	34.24	56.5
Os04t0623600-01	Rice	extracellular	11.14	41.84

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	EntrezGene:8083916	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	UniProt:C5WY71
EnsemblPlants:EER93339	ProteinID:EER93339	ProteinID:EER93339.1	InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396	PFAM:PF01070
PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80	SMART:SM01240
EnsemblPlantsGene:SORBI_3001G065600	SUPFAM:SSF51395	unigene:Sbi.1032	UniParc:UPI0001A82BD1	RefSeq:XP_002466341.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:4988890..4994406

Molecular Weight (calculated)

40222.8 Da

IEP (calculated)

9.585

GRAVY (calculated)

-0.026

Length

368 amino acids

Sequence
(BLAST)

001: MGEITNVMEY QAIAKQKLPK MAYDYYASGA EDEWTLKENR EAFSRILFRP RILIDVSKID MTTSVLGFKI SMPIMVAPTA MQKMAHPDGE YATARAASAA
101: GTIMTLSSWA TSSVEEVAST GPGIRFFQLY VHKDRKVVEQ LVRRAERAGF KAIALTVDTP RLGRREADIK NRFVLPPHLT LKNFEGLDLG KMDQANDSGL
201: ASYVAGQIDR TLSWKDVKWL QSITSMPILV KGVVTAEDAR LAVHSGAAGI IVSNHGARQL DYVPATISAL EEVVKAAQGR IPVYLDGGVR RGTDVFKALA
301: LGAAGIFVGR PVVFALAAEG EAGVRNVLRM LRDEFELTMA LSGCTTLADI NRSHVLTEGD RLRPTPRL

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.