Factsheet for Os04t0623600-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
peroxisome 3
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	peroxisome
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	secretory
TargetP:	secretory
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0500100-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	Os08t0500100-02	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0198700-01	Rice	vacuole	28.57	40.0
GSMUA_Achr7P07880_001	Banana	peroxisome, plasma membrane, unclear	43.88	11.72
VIT_19s0093g00510.t01	Wine grape	peroxisome	43.88	11.59
VIT_10s0003g03830.t01	Wine grape	peroxisome	43.88	11.56
Solyc07g056540.2.1	Tomato	plastid	42.86	11.32
PGSC0003DMT400071115	Potato	cytosol	42.86	11.32
KRH13608	Soybean	nucleus	42.86	11.32
CDX86782	Canola	cytosol, peroxisome, plastid	25.51	11.21
Os04t0623500-02	Rice	peroxisome	41.84	11.17
EER93339	Sorghum	peroxisome	41.84	11.14
TraesCS5D01G432900.1	Wheat	peroxisome	41.84	11.08
TraesCS5B01G426500.1	Wheat	golgi	41.84	11.08
TraesCS5A01G424400.1	Wheat	peroxisome	41.84	11.08
KRH43857	Soybean	peroxisome	41.84	11.05
AT3G14420.1	Thale cress	peroxisome	40.82	10.9
Os03t0786100-01	Rice	peroxisome	40.82	10.84
HORVU0Hr1G013900.4	Barley	peroxisome	35.71	10.7
Os07t0152900-01	Rice	peroxisome	39.8	10.57
CDY52449	Canola	mitochondrion	23.47	10.55
Bra035032.1-P	Field mustard	mitochondrion	23.47	10.55
AT3G14415.2	Thale cress	peroxisome	39.8	10.46
Os07t0616500-01	Rice	peroxisome	37.76	10.11
Os03t0786000-01	Rice	plastid	12.24	4.44
CDY70372	Canola	cytosol, mitochondrion, plastid	5.1	4.27
CDX88442	Canola	cytosol, mitochondrion, plastid	5.1	4.27
GSMUA_Achr4P22900_001	Banana	peroxisome	4.08	2.6

Protein Annotations

EnsemblPlants:Os04t0623600-01	EnsemblPlantsGene:Os04g0623600	Gene3D:3.20.20.70	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Aldolase_TIM	InterPro:FMN-dep_DH	InterPro:IPR013785
PANTHER:PTHR10578	PANTHER:PTHR10578:SF72	PFAM:PF01070	ProteinID:BAS91086.1	SUPFAM:SSF51395	UniParc:UPI000393A33E
UniProt:A0A0P0WEX1	MapMan:35.1	:	:	:	:

Description

GLYCOLATE OXIDASE 2Similar to Peroxisomal (S)-2-hydroxy-acid oxidase GLO2. (Os04t0623600-01)

Coordinates

chr4:+:31693183..31696603

Molecular Weight (calculated)

11308.0 Da

IEP (calculated)

6.050

GRAVY (calculated)

0.654

Length

98 amino acids

Sequence
(BLAST)

1: DVAFSYFHLT LCFDFEIKYI THYFVFQSIL WCPLWINDVR FQPVVLVDVS CIDMSMSVLG YNISMPIMIA PTALHKLAHP EGSGLLPLYL SFGNRIFQ

Best Arabidopsis Sequence Match ( AT3G14130.4 )
(BLAST)

001: MYRFRPRVLV DVSNIDMSTS MLGYPISAPI MIAPTAMHKL AHPKGEIATA KAAAACNTIM IVSFMSTCTI EEVASSCNAV RFLQIYVYKR RDVTAQIVKR
101: AEKAGFKAIV LTVDVPRLGR READIKNKMI SPQLKNFEGL VSTEVRPNEG SGVEAFASSA FDASLSWKDI EWLRSITKLP ILVKGLLTRE DALKAVEAGV
201: DGIVVSNHGA RQLDYSPATI TVLEEVVHAV KGRIPVLLDG GVRRGTDVFK ALALGAQAVL IGRPIVYGLA AKGEDGVKKV IDMLKNEFEI TMALSGCPTI
301: DDVTRNHVRT ENERIKSML

Arabidopsis Description

GLO4Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.