Factsheet for PGSC0003DMT400071115

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029209
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT3G14420.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT3G14420.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT3G14420.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT3G14420.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT3G14420.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT3G14420.1	PGSC0003DMT400077934	AT3G46090.1	17259181
AT3G14420.1	PGSC0003DMT400029209	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g056540.2.1	Tomato	plastid	97.84	97.84
CDY33220	Canola	peroxisome	87.87	91.32
CDY39115	Canola	peroxisome	90.3	91.28
Bra021556.1-P	Field mustard	peroxisome	90.3	91.28
AT3G14420.1	Thale cress	peroxisome	90.03	91.01
CDX82484	Canola	peroxisome	90.03	91.01
CDX75771	Canola	peroxisome	90.03	91.01
CDX98453	Canola	peroxisome	90.57	90.81
CDX97574	Canola	peroxisome	90.57	90.81
Bra021555.1-P	Field mustard	peroxisome	84.91	90.78
CDX68646	Canola	peroxisome	87.33	90.76
CDX81437	Canola	peroxisome	87.33	90.76
CDY25425	Canola	peroxisome	87.33	90.76
Bra001550.1-P	Field mustard	peroxisome	89.49	90.46
CDY39114	Canola	peroxisome	89.49	90.46
CDY33221	Canola	peroxisome	89.49	90.46
VIT_10s0003g03830.t01	Wine grape	peroxisome	90.57	90.32
Bra027338.1-P	Field mustard	peroxisome	90.03	90.27
CDX82483	Canola	peroxisome	90.3	89.81
Bra001551.1-P	Field mustard	peroxisome	86.25	89.39
AT3G14415.2	Thale cress	peroxisome	89.76	89.28
KRH13608	Soybean	nucleus	89.22	89.22
KRH43857	Soybean	peroxisome	89.22	89.22
EER93339	Sorghum	peroxisome	87.6	88.32
TraesCS5D01G432900.1	Wheat	peroxisome	87.06	87.3
TraesCS5B01G426500.1	Wheat	golgi	87.06	87.3
TraesCS5A01G424400.1	Wheat	peroxisome	87.06	87.3
KXG34415	Sorghum	peroxisome	86.79	87.26
Os07t0152900-01	Rice	peroxisome	86.52	86.99
Os03t0786100-01	Rice	peroxisome	86.25	86.72
TraesCS2D01G251800.2	Wheat	peroxisome, plastid	85.98	86.68
TraesCS2A01G250800.1	Wheat	peroxisome	85.98	86.68
CDX81438	Canola	peroxisome	71.97	85.85
CDY40891	Canola	peroxisome	71.97	85.85
CDY16268	Canola	peroxisome	71.97	85.85
CDY11082	Canola	peroxisome	71.97	85.85
HORVU0Hr1G013900.4	Barley	peroxisome	75.47	85.63
CDY40892	Canola	peroxisome	39.89	85.55
PGSC0003DMT400054730	Potato	peroxisome	85.18	85.18
TraesCS2B01G264100.2	Wheat	peroxisome, plastid	85.98	84.84
PGSC0003DMT400019434	Potato	peroxisome	83.56	84.24
CDY25424	Canola	peroxisome	74.12	82.09
CDX98451	Canola	peroxisome	67.66	82.03
CDX97573	Canola	peroxisome	83.56	81.36
CDX68645	Canola	peroxisome	73.05	80.42
CDY35618	Canola	peroxisome	73.05	80.42
Bra005793.1-P	Field mustard	peroxisome	25.07	79.49
GSMUA_Achr4P22900_001	Banana	peroxisome	32.88	79.22
HORVU2Hr1G060010.5	Barley	peroxisome	77.9	77.48
Zm00001d018810_P002	Maize	peroxisome, plastid	85.71	76.08
Os08t0198700-01	Rice	vacuole	14.02	74.29
CDX75772	Canola	mitochondrion	51.75	66.67
Bra027339.1-P	Field mustard	peroxisome	82.75	65.46
PGSC0003DMT400058959	Potato	peroxisome	60.38	61.54
HORVU2Hr1G060070.1	Barley	peroxisome	25.61	60.51
PGSC0003DMT400058960	Potato	peroxisome	57.14	58.24
PGSC0003DMT400058920	Potato	peroxisome	54.99	56.2
PGSC0003DMT400058950	Potato	peroxisome	52.02	51.19
Os04t0623600-01	Rice	extracellular	11.32	42.86

Protein Annotations

MapMan:1.3.2	EntrezGene:102603281	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH
InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785
InterPro:IPR037396	UniProt:M1CN80	PFAM:PF01070	EnsemblPlantsGene:PGSC0003DMG400027654	PGSC:PGSC0003DMG400027654	EnsemblPlants:PGSC0003DMT400071115
PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF103	SUPFAM:SSF51395
UniParc:UPI0002960CC5	RefSeq:XP_006348379.1	RefSeq:XP_006348380.1	SEG:seg	:	:

Description

Glycolate oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400027654]

Coordinates

chr7:+:51748762..51752737

Molecular Weight (calculated)

40613.3 Da

IEP (calculated)

9.717

GRAVY (calculated)

0.004

Length

371 amino acids

Sequence
(BLAST)

001: MEEVTNVTEY QEIAKKKLPK MAYDYYASGA EDQWTLAENR NAFSRILFRP RILIDVSKID MTTTVLGFKI SMPIMIAPTA FQKMAHPEGE YATARAASAA
101: GTIMTLSSWA TSSVEEVAST GPGIRFFQLY VYKDRNVVAQ LVRRAERAGF KAIALTVDTP RLGRREADIK NRFVLPPFLT LKNFEGLNLG KMDQANDSGL
201: ASYVAGQIDR TLSWKDVQWL QTITSMPILV KGVLTAEDAR LAVQAGAAGI IVSNHGARQL DYVPATISAL EEVVKGAQGR IPVFLDGGVR RGTDVFKALA
301: LGASGIFIGR PVVFALAAEG EAGVKKVLQM LRDEFELTMA LSGCRSLKEI TRNHIVTDWD TPRAALPAPR L

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.