CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40891	Canola	peroxisome	70.14	64.95
CDX81438	Canola	peroxisome	70.14	64.95
CDY16268	Canola	peroxisome	70.14	64.95
CDY11082	Canola	peroxisome	70.14	64.95
CDX98451	Canola	peroxisome	66.67	62.75
CDY25424	Canola	peroxisome	70.14	60.3
CDX68645	Canola	peroxisome	70.49	60.24
CDY35618	Canola	peroxisome	70.49	60.24
CDY70372	Canola	cytosol, mitochondrion, plastid	23.61	58.12
CDX88442	Canola	cytosol, mitochondrion, plastid	23.61	58.12
CDY33220	Canola	peroxisome	69.1	55.74
CDX68646	Canola	peroxisome	68.75	55.46
CDY25425	Canola	peroxisome	68.75	55.46
CDX81437	Canola	peroxisome	68.75	55.46
CDX82483	Canola	peroxisome	70.83	54.69
CDX97574	Canola	peroxisome	70.14	54.59
CDX98453	Canola	peroxisome	70.14	54.59
CDX75771	Canola	peroxisome	69.1	54.22
CDY39115	Canola	peroxisome	69.1	54.22
CDX82484	Canola	peroxisome	69.1	54.22
CDY33221	Canola	peroxisome	69.1	54.22
CDY39114	Canola	peroxisome	68.75	53.95
PGSC0003DMT400071115	Potato	cytosol	66.67	51.75
Solyc07g056540.2.1	Tomato	plastid	66.32	51.48
KRH43857	Soybean	peroxisome	65.62	50.94
VIT_10s0003g03830.t01	Wine grape	peroxisome	65.28	50.54
KRH13608	Soybean	nucleus	64.24	49.87
CDY55631	Canola	peroxisome	61.81	48.37
CDX97573	Canola	peroxisome	63.54	48.03
CDY01535	Canola	peroxisome	61.11	47.83
CDY40892	Canola	peroxisome	28.47	47.4
CDY52449	Canola	mitochondrion	34.72	45.87
CDX86782	Canola	cytosol, peroxisome, plastid	35.07	45.29
CDX78843	Canola	peroxisome	57.64	45.11
CDX99474	Canola	peroxisome	57.29	44.84
GSMUA_Achr4P22900_001	Banana	peroxisome	21.88	40.91
CDY39098	Canola	peroxisome	44.79	38.05
CDY49371	Canola	peroxisome	7.64	37.93
CDX96897	Canola	peroxisome	22.57	37.36
CDY33247	Canola	peroxisome	45.49	36.09
CDY39100	Canola	peroxisome	44.44	35.65
CDX75747	Canola	peroxisome	44.79	35.54
CDX82499	Canola	peroxisome	43.75	34.9
CDY52265	Canola	peroxisome	43.4	34.63
CDY52266	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	44.1	34.23
CDY13160	Canola	peroxisome	9.38	23.89
CDY35448	Canola	peroxisome	9.03	23.01
CDX97546	Canola	peroxisome	43.75	17.55
CDX98452	Canola	cytosol, nucleus, peroxisome	0.0	0.0

Protein Annotations

Gene3D:3.20.20.70	MapMan:50.1.1	GO:A0A078CG60	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	EnsemblPlants:CDX75772
ProteinID:CDX75772	ProteinID:CDX75772.1	InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181
GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00123714001	InterPro:IPR013785	InterPro:IPR037396	PFAM:PF01070
ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80	SUPFAM:SSF51395	TMHMM:TMhelix
UniParc:UPI0004EF03B2	SEG:seg	:	:	:	:

Description

BnaC03g38550D

Coordinates

chrLK031805:+:477387..485161

Molecular Weight (calculated)

32342.0 Da

IEP (calculated)

10.616

GRAVY (calculated)

-0.045

Length

288 amino acids

Sequence
(BLAST)

001: MKRLQRRSCL RCFRPRILID VIKIDMTTTV LGFKISMPIM VAPTAMQKMG NMLRLGLPLL REPSWYVNHI VTKHSYILNR HKSSAEIERI EVIIFSGELA
101: RYSNVLVYKN KNVVEQLVRR AERAGFKAIA LTVDTPRLGR RESDIKNRKF KPLCVLILQI HFAPNLTLKN FEGLDLGKMD EANDSGLASY VAGQIDRTLS
201: WKDVQWLQTI TKMPILVKGV LTGEDARIAV QAGAAGIIVS NHGARQLDYV PATISALEEV VKATQGRIPV FLDGGVRRGT CERQGFTS

Best Arabidopsis Sequence Match ( AT3G14420.1 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.