CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY11941
CDY20736
CDY36789
CDY49390
CDY66434
CDY66435
CDY67858

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	CDY11941	AT5G56290.1	21798944
AT3G14420.1	CDY20736	AT5G56290.1	21798944
AT3G14420.1	CDY36789	AT5G56290.1	21798944
AT3G14420.1	CDY49390	AT5G56290.1	21798944
AT3G14420.1	CDY66434	AT5G56290.1	21798944
AT3G14420.1	CDY66435	AT5G56290.1	21798944
AT3G14420.1	CDY67858	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40891	Canola	peroxisome	100.0	100.0
CDY11082	Canola	peroxisome	100.0	100.0
CDX81438	Canola	peroxisome	100.0	100.0
CDX68645	Canola	peroxisome	99.68	91.99
CDY35618	Canola	peroxisome	99.68	91.99
CDY25424	Canola	peroxisome	99.04	91.94
CDX98451	Canola	peroxisome	84.57	85.95
CDX97574	Canola	peroxisome	91.96	77.3
CDX98453	Canola	peroxisome	91.96	77.3
CDX82483	Canola	peroxisome	92.6	77.21
CDY39115	Canola	peroxisome	91.0	77.11
CDY33221	Canola	peroxisome	91.0	77.11
AT3G14420.1	Thale cress	peroxisome	91.0	77.11
CDX82484	Canola	peroxisome	90.68	76.84
CDY39114	Canola	peroxisome	90.68	76.84
CDX75771	Canola	peroxisome	90.68	76.84
CDY33220	Canola	peroxisome	87.78	76.47
CDX81437	Canola	peroxisome	87.46	76.19
CDX68646	Canola	peroxisome	87.46	76.19
CDY25425	Canola	peroxisome	87.46	76.19
Solyc07g056540.2.1	Tomato	plastid	86.17	72.24
KRH43857	Soybean	peroxisome	86.17	72.24
PGSC0003DMT400071115	Potato	cytosol	85.85	71.97
VIT_10s0003g03830.t01	Wine grape	peroxisome	85.53	71.51
KRH13608	Soybean	nucleus	84.57	70.89
CDX75772	Canola	mitochondrion	64.95	70.14
CDX88442	Canola	cytosol, mitochondrion, plastid	26.05	69.23
CDY70372	Canola	cytosol, mitochondrion, plastid	26.05	69.23
CDY55631	Canola	peroxisome	81.35	68.75
CDX97573	Canola	peroxisome	83.6	68.24
CDY01535	Canola	peroxisome	80.71	68.21
CDX78843	Canola	peroxisome	76.53	64.67
CDX99474	Canola	peroxisome	76.21	64.4
CDY52449	Canola	mitochondrion	41.16	58.72
CDX86782	Canola	cytosol, peroxisome, plastid	41.8	58.3
CDY13160	Canola	peroxisome	19.61	53.98
CDY35448	Canola	peroxisome	19.61	53.98
CDY40892	Canola	peroxisome	27.33	49.13
CDY33247	Canola	peroxisome	55.95	47.93
CDX75747	Canola	peroxisome	55.63	47.66
CDY39100	Canola	peroxisome	54.66	47.35
CDY39098	Canola	peroxisome	50.48	46.31
CDX82499	Canola	peroxisome	53.05	45.71
CDY52266	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	54.34	45.55
CDY52265	Canola	peroxisome	52.73	45.43
GSMUA_Achr4P22900_001	Banana	peroxisome	20.26	40.91
CDY49371	Canola	peroxisome	7.07	37.93
CDX96897	Canola	peroxisome	20.9	37.36
CDX97546	Canola	peroxisome	53.7	23.26
CDX98452	Canola	cytosol, nucleus, peroxisome	0.0	0.0

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	GO:A0A078FV34	UniProt:A0A078FV34	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN
ProteinID:CDY11082.1	EnsemblPlants:CDY16268	ProteinID:CDY16268	ProteinID:CDY16268.1	ProteinID:CDY40891.1	InterPro:FMN-dep_DH
InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00090751001
InterPro:IPR013785	InterPro:IPR037396	PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349
PANTHER:PTHR10578	PANTHER:PTHR10578:SF80	SUPFAM:SSF51395	UniParc:UPI0004EE3F7B	SEG:seg	:

Description

BnaC01g23030DBnaC01g23030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FV34]

Coordinates

chrLK032062:-:223983..226971

Molecular Weight (calculated)

34364.7 Da

IEP (calculated)

9.736

GRAVY (calculated)

-0.091

Length

311 amino acids

Sequence
(BLAST)

001: MKITNVTEYE AIAKEKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPEGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RKFKPLCVLI LQIHFAPNLT LKNFEGLDLG
201: KMDEANDSGL ASYVAGQIDR TLSWKDVQWL QTITKMPILV KGVLTGEDAR IAVQAGAAGI IVSNHGARQL DYVPATISAL EEVVKATQGR IPVFLDGGVR
301: RGTCERQGFT S

Best Arabidopsis Sequence Match ( AT3G14415.1 )
(BLAST)

001: MEITNVTEYD AIAKAKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVNKIDM ATTVLGFKIS MPIMVAPTAF QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRKVVEQL VRRAEKAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDIQWLQ TITNMPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRV PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFALAAEGE AGVKKVLQML RDEFELTMAL SGCRSLSEIT RNHIVTEWDT PRHLPRL

Arabidopsis Description

GOX2 [Source:UniProtKB/TrEMBL;Acc:A0A178VD55]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.