CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi

Predictor Summary:

cytosol 2
peroxisome 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, secretory
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33247	Canola	peroxisome	86.25	88.15
CDY39100	Canola	peroxisome	83.83	86.63
CDY39098	Canola	peroxisome	78.71	86.14
AT3G14150.1	Thale cress	peroxisome	83.56	85.4
AT3G14130.1	Thale cress	peroxisome	83.29	85.12
CDY35448	Canola	peroxisome	25.88	84.96
CDX82499	Canola	peroxisome	82.48	84.76
CDY13160	Canola	peroxisome	25.61	84.07
CDX75747	Canola	peroxisome	81.4	83.2
CDY52265	Canola	peroxisome	76.82	78.95
VIT_09s0002g00810.t01	Wine grape	peroxisome	70.89	72.25
Solyc03g122170.2.1	Tomato	peroxisome	64.96	70.26
PGSC0003DMT400058959	Potato	peroxisome	68.73	70.05
Solyc03g122130.2.1	Tomato	peroxisome	63.07	68.22
PGSC0003DMT400058920	Potato	peroxisome	66.58	68.04
Solyc03g122140.2.1	Tomato	peroxisome	66.31	67.77
PGSC0003DMT400058960	Potato	peroxisome	66.04	67.31
CDY49371	Canola	peroxisome	10.51	67.24
VIT_09s0002g00820.t01	Wine grape	peroxisome, plastid	71.43	63.7
PGSC0003DMT400058950	Potato	peroxisome	61.99	61.01
CDX96897	Canola	peroxisome	27.49	58.62
CDX82484	Canola	peroxisome	57.68	58.31
CDX75771	Canola	peroxisome	57.68	58.31
CDX81437	Canola	peroxisome	56.06	58.26
CDX68646	Canola	peroxisome	56.06	58.26
CDY25425	Canola	peroxisome	56.06	58.26
CDY39114	Canola	peroxisome	57.41	58.04
CDY33221	Canola	peroxisome	57.41	58.04
CDX82483	Canola	peroxisome	58.22	57.91
CDX97574	Canola	peroxisome	57.68	57.84
CDX98453	Canola	peroxisome	57.68	57.84
CDY39115	Canola	peroxisome	57.14	57.77
CDY33220	Canola	peroxisome	55.53	57.7
CDY55631	Canola	peroxisome	57.14	57.61
CDY40892	Canola	peroxisome	26.68	57.23
CDY01535	Canola	peroxisome	56.6	57.07
CDX78843	Canola	peroxisome	56.33	56.79
CDX99474	Canola	peroxisome	56.06	56.52
CDY16268	Canola	peroxisome	45.55	54.34
CDY11082	Canola	peroxisome	45.55	54.34
CDY40891	Canola	peroxisome	45.55	54.34
CDX81438	Canola	peroxisome	45.55	54.34
CDX97573	Canola	peroxisome	54.45	53.02
CDX98451	Canola	peroxisome	43.13	52.29
CDY25424	Canola	peroxisome	47.17	52.24
CDX68645	Canola	peroxisome	46.9	51.63
CDY35618	Canola	peroxisome	46.9	51.63
Solyc03g122150.2.1	Tomato	peroxisome	20.75	50.33
CDX98452	Canola	cytosol, nucleus, peroxisome	3.77	46.67
CDX75772	Canola	mitochondrion	34.23	44.1
CDY70372	Canola	cytosol, mitochondrion, plastid	13.48	42.73
CDX88442	Canola	cytosol, mitochondrion, plastid	13.48	42.73
CDX97546	Canola	peroxisome	79.51	41.09
CDY52449	Canola	mitochondrion	21.02	35.78
CDX86782	Canola	cytosol, peroxisome, plastid	21.29	35.43

Protein Annotations

Gene3D:3.20.20.70	MapMan:50.1.1	GO:A0A078IQU1	UniProt:A0A078IQU1	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN
EnsemblPlants:CDY52266	ProteinID:CDY52266	ProteinID:CDY52266.1	InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00005253001	InterPro:IPR013785	InterPro:IPR037396
PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF67
SMART:SM01240	SUPFAM:SSF51395	UniParc:UPI0004EF0467	SEG:seg	:	:

Description

BnaC05g52100DBnaC05g52100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQU1]

Coordinates

chrLK033072:-:41466..43493

Molecular Weight (calculated)

40999.3 Da

IEP (calculated)

8.830

GRAVY (calculated)

0.081

Length

371 amino acids

Sequence
(BLAST)

001: MFLHLSFIWI KIVNVNEFQE LAKQALPKIY YDFYSGGAED QHTLKENVEA FTRIMFRPRV LVDVSKIDTS TRILGYPISS PIMIAPAAMH MLAHPEGETA
101: AAKAAAACNT IMIVSFMASC TIEEVASSCN TVKFLQIYVY KQREVTAQMV KRAEKAGFKA IVLTVDVPKL GRREADIKNK LISPKLKNFE GLFSTELRPS
201: EGSGMEAVAS RGLDASFSWK DIEWLRSITK LQILVKGILT REDALKAVEA GVDGIVVSNH GARQLDYSPA TITVLEEVVH VVGRRIPVLL EGGIRRGTDV
301: FKALALGAKA VLIGRPVVYG LVAKGEDGVK KVIDMLKNEF ELTMALSGCP TIHDITRNHV RTEDERLHSM L

Best Arabidopsis Sequence Match ( AT3G14150.2 )
(BLAST)

001: MDQIVNVDEF QELAKQALPK MYYDFYNGGA EDQHTLNENV QAFRRIMFRP RVLVDVSKID MSTKILGYPI SAPIMIAPTG NHKLAHPEGE TATAKAAAAC
101: NTIMIVSYMS SCTFEEIASS CNAVRFLQIY VYKRRDITAQ VVKRAEKAGF KAIVLTVDVP RLGRREADIK NKMISPQLKN FEGLFSTEVR PSKGSGVQAF
201: ASRAFDASFS WKDIEWLRSI TELPILVKGI LTREDALKAV EAGVDGIIVS NHGGRQLDYS PATITVLEEV VQVVRGRIPV LLDGGVRRGT DVFKALALGA
301: QAVLIGRPII YGLAAKGEDG VKKVIDMLKN EFEITMALSG CPTIDDITRN HVRTENERLH SML

Arabidopsis Description

GLO3HAOX2 [Source:UniProtKB/TrEMBL;Acc:A0A178VKC7]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.