Factsheet for VIT_09s0002g00820.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

plastid 4
peroxisome 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plastid
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	peroxisome
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
Predotar:	plastid
PProwler:	secretory
PTS1:	peroxisome
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g00810.t01	Wine grape	peroxisome	79.33	90.66
Solyc03g122170.2.1	Tomato	peroxisome	64.42	78.13
PGSC0003DMT400058959	Potato	peroxisome	68.03	77.75
AT3G14130.1	Thale cress	peroxisome	66.35	76.03
Bra021533.1-P	Field mustard	peroxisome	66.11	75.76
CDY33247	Canola	peroxisome	65.62	75.21
AT3G14150.1	Thale cress	peroxisome	65.38	74.93
Bra021535.1-P	Field mustard	peroxisome	65.38	74.93
CDY39100	Canola	peroxisome	64.66	74.93
PGSC0003DMT400058960	Potato	peroxisome	65.38	74.73
Solyc03g122130.2.1	Tomato	peroxisome	61.54	74.64
CDX75747	Canola	peroxisome	64.9	74.38
Solyc03g122140.2.1	Tomato	peroxisome	64.66	74.1
CDY39098	Canola	peroxisome	60.34	74.04
PGSC0003DMT400058920	Potato	peroxisome	64.42	73.83
CDX82499	Canola	peroxisome	63.22	72.85
Bra001536.1-P	Field mustard	peroxisome	63.22	72.85
CDY13160	Canola	peroxisome	19.71	72.57
CDY35448	Canola	peroxisome	19.71	72.57
CDY52266	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	63.7	71.43
CDY52265	Canola	peroxisome	61.78	71.19
GSMUA_Achr3P01940_001	Banana	peroxisome	62.02	70.88
HORVU2Hr1G030930.2	Barley	peroxisome	59.38	67.49
Os07t0616500-01	Rice	peroxisome	59.13	67.21
TraesCS2A01G168400.1	Wheat	peroxisome	58.65	66.67
Bra036980.1-P	Field mustard	peroxisome	9.13	66.67
OQU90257	Sorghum	peroxisome	58.65	66.48
TraesCS2D01G175900.1	Wheat	peroxisome	58.17	66.12
OQU90259	Sorghum	peroxisome	58.17	65.76
CDY49371	Canola	peroxisome	9.13	65.52
TraesCS5A01G266500.2	Wheat	peroxisome	56.73	64.48
TraesCS5D01G274300.1	Wheat	peroxisome	56.25	63.93
TraesCS5B01G266100.1	Wheat	peroxisome	55.77	63.56
VIT_10s0003g03830.t01	Wine grape	peroxisome	56.73	63.44
PGSC0003DMT400058950	Potato	peroxisome	57.21	63.13
VIT_19s0093g00510.t01	Wine grape	peroxisome	55.53	62.26
Solyc03g122150.2.1	Tomato	peroxisome	22.36	60.78
HORVU6Hr1G051600.1	Barley	peroxisome, plastid	15.62	57.02
KRH25749	Soybean	vacuole	11.06	54.76
Zm00001d006868_P007	Maize	peroxisome	54.09	53.07
TraesCS2B01G194600.3	Wheat	peroxisome	41.83	44.5
CDX97546	Canola	peroxisome	65.38	37.88
Bra027370.1-P	Field mustard	vacuole	65.14	27.07
Zm00001d023759_P001	Maize	mitochondrion, nucleus, peroxisome	12.26	19.62
Zm00001d024312_P001	Maize	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	5.05	17.65
Os03t0786000-01	Rice	plastid	11.06	17.04

Protein Annotations

EntrezGene:100248111	wikigene:100248111	Gene3D:3.20.20.70	MapMan:50.1.1	EMBL:AM428954	InterPro:Aldolase_TIM
InterPro:Alpha-hydoxy_acid_DH_FMN	ProteinID:CAN60339	ProteinID:CAN60339.1	ProteinID:CCB59265	ProteinID:CCB59265.1	UniProt:F6HXQ8
InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	EMBL:FN596494	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491
GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396	EntrezGene:LOC100248111	wikigene:LOC100248111	PFAM:PF01070
PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF102	SUPFAM:SSF51395
UniParc:UPI000210A207	ArrayExpress:VIT_09s0002g00820	EnsemblPlantsGene:VIT_09s0002g00820	EnsemblPlants:VIT_09s0002g00820.t01	RefSeq:XP_002270101	RefSeq:XP_002270101.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:553954..561989

Molecular Weight (calculated)

45620.7 Da

IEP (calculated)

8.479

GRAVY (calculated)

0.187

Length

416 amino acids

Sequence
(BLAST)

001: MTIIPFSSFH SHSGTAEALS ESKVSFVGFF VSLGFSILLH VYLTIKQLVQ VLMAAEPVNV NEFQELARQS LPKMYYDFFS GGAEDQHTLR ENVEAFSRIT
101: FHPRILVDVS KIDMSTTVLG FNISSPIMIA PTAMHKLAHP EGEIATARAA AACNTIMVLS FMSTCTVEEV ASSCNAVRFL QLYVFKRRDV SAQLVQRAER
201: NGFKAIVLTA DTPRLGRREA DIKNRMVSPR LKNFEGLIST EVVTDKGSNI EALASGMFDA SLSWKDIEWL RSITNLPILI KGVLTCEDAI KAVEVGVSGI
301: IVSNHGARQL DYVPATISAL EEVVLAVGGK VPVLFDGGIR RGTDIFKALA LGAQAVFIGR PVIYGLAAKG KHGVRRVIEM LKDELEITMA LSGCSSVKDI
401: SRRHVRTERD RLQSML

Best Arabidopsis Sequence Match ( AT3G14130.1 )
(BLAST)

001: MDQIVNVDEF QELAKQALPK MYYDFYNGGA EDQHTLNENV QAFRRIMFRP RVLVDVSNID MSTSMLGYPI SAPIMIAPTA MHKLAHPKGE IATAKAAAAC
101: NTIMIVSFMS TCTIEEVASS CNAVRFLQIY VYKRRDVTAQ IVKRAEKAGF KAIVLTVDVP RLGRREADIK NKMISPQLKN FEGLVSTEVR PNEGSGVEAF
201: ASSAFDASLS WKDIEWLRSI TKLPILVKGL LTREDALKAV EAGVDGIVVS NHGARQLDYS PATITVLEEV VHAVKGRIPV LLDGGVRRGT DVFKALALGA
301: QAVLIGRPIV YGLAAKGEDG VKKVIDMLKN EFEITMALSG CPTIDDVTRN HVRTENERIK SML

Arabidopsis Description

GLO4Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.