Factsheet for PGSC0003DMT400058960

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g122130.2.1	Tomato	peroxisome	91.76	97.38
PGSC0003DMT400058920	Potato	peroxisome	84.07	84.3
PGSC0003DMT400058959	Potato	peroxisome	82.14	82.14
PGSC0003DMT400058950	Potato	peroxisome	75.82	73.21
VIT_09s0002g00810.t01	Wine grape	peroxisome	72.8	72.8
CDY33247	Canola	peroxisome	70.33	70.52
CDY39100	Canola	peroxisome	69.23	70.19
Bra021533.1-P	Field mustard	peroxisome	69.78	69.97
Bra021535.1-P	Field mustard	peroxisome	69.78	69.97
AT3G14130.1	Thale cress	peroxisome	69.51	69.7
CDX75747	Canola	peroxisome	69.23	69.42
AT3G14150.1	Thale cress	peroxisome	68.96	69.15
CDY39098	Canola	peroxisome	64.29	69.03
CDX82499	Canola	peroxisome	68.13	68.7
Bra001536.1-P	Field mustard	peroxisome	68.13	68.7
GSMUA_Achr3P01940_001	Banana	peroxisome	67.86	67.86
CDY52265	Canola	peroxisome	66.76	67.31
CDY35448	Canola	peroxisome	20.88	67.26
CDY13160	Canola	peroxisome	20.6	66.37
CDY52266	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	67.31	66.04
VIT_09s0002g00820.t01	Wine grape	peroxisome, plastid	74.73	65.38
OQU90257	Sorghum	peroxisome	65.66	65.12
OQU90259	Sorghum	peroxisome	64.84	64.13
Os07t0616500-01	Rice	peroxisome	64.29	63.93
HORVU2Hr1G030930.2	Barley	peroxisome	64.29	63.93
TraesCS2D01G175900.1	Wheat	peroxisome	64.01	63.66
TraesCS2A01G168400.1	Wheat	peroxisome	63.74	63.39
TraesCS5A01G266500.2	Wheat	peroxisome	62.64	62.3
TraesCS5D01G274300.1	Wheat	peroxisome	62.09	61.75
Bra036980.1-P	Field mustard	peroxisome	9.62	61.4
TraesCS5B01G266100.1	Wheat	peroxisome	61.54	61.37
PGSC0003DMT400019434	Potato	peroxisome	57.97	57.34
PGSC0003DMT400071115	Potato	cytosol	58.24	57.14
CDY49371	Canola	peroxisome	9.07	56.9
PGSC0003DMT400054730	Potato	peroxisome	57.42	56.33
HORVU6Hr1G051600.1	Barley	peroxisome, plastid	17.03	54.39
Zm00001d006868_P007	Maize	peroxisome	60.71	52.12
TraesCS2B01G194600.3	Wheat	peroxisome	44.51	41.43
KRH25749	Soybean	vacuole	9.34	40.48
CDX97546	Canola	peroxisome	66.76	33.84
Bra027370.1-P	Field mustard	vacuole	66.76	24.28
Zm00001d024312_P001	Maize	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	6.32	19.33
Zm00001d023759_P001	Maize	mitochondrion, nucleus, peroxisome	13.74	19.23
Os03t0786000-01	Rice	plastid	11.26	15.19

Protein Annotations

EntrezGene:102601782	Gene3D:3.20.20.70	MapMan:50.1.1	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH
InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785
InterPro:IPR037396	UniProt:M1C3L1	PFAM:PF01070	EnsemblPlantsGene:PGSC0003DMG401022901	PGSC:PGSC0003DMG401022901	EnsemblPlants:PGSC0003DMT400058960
PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF67	SUPFAM:SSF51395
UniParc:UPI000295BFE2	RefSeq:XP_015162218.1	:	:	:	:

Description

(S)-2-hydroxy-acid oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG401022901]

Coordinates

chr3:+:61308261..61313090

Molecular Weight (calculated)

39916.7 Da

IEP (calculated)

7.434

GRAVY (calculated)

0.082

Length

364 amino acids

Sequence
(BLAST)

001: MAGEPVNVNE FQELARKVLP KMYYDFFAGG AEDEYTLKEN IEAFHRITIQ PRILVDVSRI DMSTVILGHK TSAPIILAPS AAHQLAHPEG EVATARGAAA
101: CNVIMGLSFM STCTVEEVAS SCNAVRFFQI YVYKRRDVTE FMVRRAESNG FRAIILTADT PRLGRREADI KNKMISFRLR NFEGFISTDV VSDKGSNLAA
201: YAEETLDPSL CWKDIAWLKS ITKLPILIKG VLNGEDAMKA IEAGVVGIII SNHGARQLDY SPATISVLEE VVQAVQGKVP VLLDGGIRRG TDIFKALALG
301: AKAVMIGRPV IYGLAAKGES GVKQVIEMLK NELELTMALA GCCTVDDITR SHVKTEKEKF LCRM

Best Arabidopsis Sequence Match ( AT3G14130.1 )
(BLAST)

001: MDQIVNVDEF QELAKQALPK MYYDFYNGGA EDQHTLNENV QAFRRIMFRP RVLVDVSNID MSTSMLGYPI SAPIMIAPTA MHKLAHPKGE IATAKAAAAC
101: NTIMIVSFMS TCTIEEVASS CNAVRFLQIY VYKRRDVTAQ IVKRAEKAGF KAIVLTVDVP RLGRREADIK NKMISPQLKN FEGLVSTEVR PNEGSGVEAF
201: ASSAFDASLS WKDIEWLRSI TKLPILVKGL LTREDALKAV EAGVDGIVVS NHGARQLDYS PATITVLEEV VHAVKGRIPV LLDGGVRRGT DVFKALALGA
301: QAVLIGRPIV YGLAAKGEDG VKKVIDMLKN EFEITMALSG CPTIDDVTRN HVRTENERIK SML

Arabidopsis Description

GLO4Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.