Factsheet for TraesCS5D01G274300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G266100.1	Wheat	peroxisome	95.63	95.89
TraesCS5A01G266500.2	Wheat	peroxisome	90.71	90.71
TraesCS2D01G175900.1	Wheat	peroxisome	88.8	88.8
HORVU2Hr1G030930.2	Barley	peroxisome	88.25	88.25
OQU90257	Sorghum	peroxisome	84.15	83.92
OQU90259	Sorghum	peroxisome	81.42	80.98
Os07t0616500-01	Rice	peroxisome	80.33	80.33
GSMUA_Achr3P01940_001	Banana	peroxisome	67.49	67.86
Zm00001d006868_P007	Maize	peroxisome	77.32	66.75
VIT_09s0002g00810.t01	Wine grape	peroxisome	63.11	63.46
Solyc03g122130.2.1	Tomato	peroxisome	59.02	62.97
AT3G14130.1	Thale cress	peroxisome	61.75	62.26
PGSC0003DMT400058960	Potato	peroxisome	61.75	62.09
Bra021533.1-P	Field mustard	peroxisome	61.48	61.98
AT3G14150.1	Thale cress	peroxisome	61.2	61.71
Solyc03g122170.2.1	Tomato	peroxisome	57.65	61.52
Solyc03g122140.2.1	Tomato	peroxisome	60.93	61.43
PGSC0003DMT400058959	Potato	peroxisome	60.93	61.26
PGSC0003DMT400058920	Potato	peroxisome	60.66	61.16
Bra021535.1-P	Field mustard	peroxisome	60.38	60.88
Bra001536.1-P	Field mustard	peroxisome	59.56	60.39
TraesCS2D01G251800.2	Wheat	peroxisome, plastid	57.38	57.07
VIT_09s0002g00820.t01	Wine grape	peroxisome, plastid	63.93	56.25
TraesCS5D01G432900.1	Wheat	peroxisome	56.83	56.22
TraesCS2D01G467700.1	Wheat	peroxisome	56.56	56.1
PGSC0003DMT400058950	Potato	peroxisome	56.01	54.38
Bra036980.1-P	Field mustard	peroxisome	8.2	52.63
CDX98452	Canola	cytosol, nucleus, peroxisome	4.1	50.0
Solyc03g122150.2.1	Tomato	peroxisome	19.95	47.71
KRH25749	Soybean	vacuole	7.92	34.52
Bra027370.1-P	Field mustard	vacuole	58.74	21.48

Protein Annotations

Gene3D:3.20.20.70	MapMan:50.1.1	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH	InterPro:FMN_HAD
InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396
PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF67
SMART:SM01240	SUPFAM:SSF51395	EnsemblPlantsGene:TraesCS5D01G274300	EnsemblPlants:TraesCS5D01G274300.1	TIGR:cd02809	:

Description

No Description!

Coordinates

chr5D:+:377475132..377482676

Molecular Weight (calculated)

39695.2 Da

IEP (calculated)

7.879

GRAVY (calculated)

-0.033

Length

366 amino acids

Sequence
(BLAST)

001: MENNLPVNIR EYQELAKKAL SKMHYDYING GAEDEHTLRD NIAAYGRILL RPRVLVDVSN IDMSTSLLGY NMPSPIIVAP TGSHKVANPE GEVATAKAAA
101: SCNSLMVLSF SSNCRIEEVA ASCDAIRFYQ LYVFKKRAVS ATLVRRAESS GFKAIVLTVD NPMLGRRERD IRNKMVAPDK PNLEGLISLE NLDTTDGSQL
201: AKYVRDTMDP SLSWKDVEWL KSITSLPILV KGILTAEDAR KAVEAGAAGV IVSNHGGRQL DYAPATISVL EEVVKAVAGA VPVLVDGGIQ RGTDVLKALA
301: LGARAVMVGR PVMYGLAARG EAGAKHVIEM LNRELELAMT LCGCRSVAEI TRDRVQTEGD RMRSLL

Best Arabidopsis Sequence Match ( AT3G14130.1 )
(BLAST)

001: MDQIVNVDEF QELAKQALPK MYYDFYNGGA EDQHTLNENV QAFRRIMFRP RVLVDVSNID MSTSMLGYPI SAPIMIAPTA MHKLAHPKGE IATAKAAAAC
101: NTIMIVSFMS TCTIEEVASS CNAVRFLQIY VYKRRDVTAQ IVKRAEKAGF KAIVLTVDVP RLGRREADIK NKMISPQLKN FEGLVSTEVR PNEGSGVEAF
201: ASSAFDASLS WKDIEWLRSI TKLPILVKGL LTREDALKAV EAGVDGIVVS NHGARQLDYS PATITVLEEV VHAVKGRIPV LLDGGVRRGT DVFKALALGA
301: QAVLIGRPIV YGLAAKGEDG VKKVIDMLKN EFEITMALSG CPTIDDVTRN HVRTENERIK SML

Arabidopsis Description

GLO4Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.