Factsheet for PGSC0003DMT400058920

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g122140.2.1	Tomato	peroxisome	95.59	95.59
PGSC0003DMT400058960	Potato	peroxisome	84.3	84.07
PGSC0003DMT400058959	Potato	peroxisome	80.72	80.49
PGSC0003DMT400058950	Potato	peroxisome	77.69	74.8
VIT_09s0002g00810.t01	Wine grape	peroxisome	71.63	71.43
CDX75747	Canola	peroxisome	69.7	69.7
AT3G14150.1	Thale cress	peroxisome	69.15	69.15
AT3G14130.1	Thale cress	peroxisome	68.87	68.87
Bra021535.1-P	Field mustard	peroxisome	68.87	68.87
CDY33247	Canola	peroxisome	68.59	68.59
CDY39100	Canola	peroxisome	67.77	68.52
Bra021533.1-P	Field mustard	peroxisome	68.32	68.32
CDX82499	Canola	peroxisome	67.77	68.14
Bra001536.1-P	Field mustard	peroxisome	67.22	67.59
GSMUA_Achr3P01940_001	Banana	peroxisome	67.77	67.58
CDY39098	Canola	peroxisome	63.09	67.55
CDY35448	Canola	peroxisome	20.94	67.26
CDY52265	Canola	peroxisome	66.39	66.76
CDY52266	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	68.04	66.58
CDY13160	Canola	peroxisome	20.66	66.37
Bra036980.1-P	Field mustard	peroxisome	10.19	64.91
VIT_09s0002g00820.t01	Wine grape	peroxisome, plastid	73.83	64.42
OQU90257	Sorghum	peroxisome	63.91	63.22
TraesCS2A01G168400.1	Wheat	peroxisome	63.64	63.11
TraesCS2D01G175900.1	Wheat	peroxisome	63.36	62.84
HORVU2Hr1G030930.2	Barley	peroxisome	63.09	62.57
CDY49371	Canola	peroxisome	9.92	62.07
Os07t0616500-01	Rice	peroxisome	62.53	62.02
OQU90259	Sorghum	peroxisome	62.53	61.68
TraesCS5A01G266500.2	Wheat	peroxisome	61.98	61.48
TraesCS5D01G274300.1	Wheat	peroxisome	61.16	60.66
TraesCS5B01G266100.1	Wheat	peroxisome	60.88	60.55
PGSC0003DMT400019434	Potato	peroxisome	56.47	55.71
PGSC0003DMT400071115	Potato	cytosol	56.2	54.99
PGSC0003DMT400054730	Potato	peroxisome	56.2	54.99
Zm00001d006868_P007	Maize	peroxisome	58.68	50.24
HORVU6Hr1G051600.1	Barley	peroxisome, plastid	15.43	49.12
KRH25749	Soybean	vacuole	9.92	42.86
TraesCS2B01G194600.3	Wheat	peroxisome	43.25	40.15
CDX97546	Canola	peroxisome	66.67	33.7
Bra027370.1-P	Field mustard	vacuole	66.67	24.18
Zm00001d023759_P001	Maize	mitochondrion, nucleus, peroxisome	14.05	19.62
Zm00001d024312_P001	Maize	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	6.06	18.49
Os03t0786000-01	Rice	plastid	11.57	15.56

Protein Annotations

EntrezGene:102579596	Gene3D:3.20.20.70	MapMan:50.1.1	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH
InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785
InterPro:IPR037396	UniProt:M1C3I4	PFAM:PF01070	EnsemblPlantsGene:PGSC0003DMG400022890	PGSC:PGSC0003DMG400022890	EnsemblPlants:PGSC0003DMT400058920
PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF67	SMART:SM01240
SUPFAM:SSF51395	UniParc:UPI0002960EEC	RefSeq:XP_006343127.1	RefSeq:XP_015162219.1	:	:

Description

(S)-2-hydroxy-acid oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400022890]

Coordinates

chr3:-:61313405..61316296

Molecular Weight (calculated)

39563.2 Da

IEP (calculated)

7.782

GRAVY (calculated)

0.102

Length

363 amino acids

Sequence
(BLAST)

001: MAGEPVNVNE FEELARKVLP KIYYDFFSGG AEDQYTLKEN IEAFRRITIR PRILVDVSKI DMSTIILGHR TSAPIIVAPT SSHQLAHPEG EVATARGAAA
101: CNVIMGVAFT STCTMEEVAS SCKAVRFIQT FAFKREITAN MVQRAERNGF RAIILTVDTP RLGRKEAVIK NKMIAPPFKN FEGLISTEVV SDKGSNVEAY
201: AAETLDPSFC WKDIAWLKSI TKLPILIKGV LTGEDATKAI EAGVAGIIVS NHGARQLDYT PATISVLDEV VHAVQGKVPV LFDGGIRRGT DIFKALALGA
301: KAVLIGRPVI YGLAAKGETG VKQVIEMLKN ELEQTMALAG CCTVDDITRS HVFTETERFL CRM

Best Arabidopsis Sequence Match ( AT3G14130.1 )
(BLAST)

001: MDQIVNVDEF QELAKQALPK MYYDFYNGGA EDQHTLNENV QAFRRIMFRP RVLVDVSNID MSTSMLGYPI SAPIMIAPTA MHKLAHPKGE IATAKAAAAC
101: NTIMIVSFMS TCTIEEVASS CNAVRFLQIY VYKRRDVTAQ IVKRAEKAGF KAIVLTVDVP RLGRREADIK NKMISPQLKN FEGLVSTEVR PNEGSGVEAF
201: ASSAFDASLS WKDIEWLRSI TKLPILVKGL LTREDALKAV EAGVDGIVVS NHGARQLDYS PATITVLEEV VHAVKGRIPV LLDGGVRRGT DVFKALALGA
301: QAVLIGRPIV YGLAAKGEDG VKKVIDMLKN EFEITMALSG CPTIDDVTRN HVRTENERIK SML

Arabidopsis Description

GLO4Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.