Factsheet for GSMUA_Achr3P01940_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90257	Sorghum	peroxisome	73.08	72.48
HORVU2Hr1G030930.2	Barley	peroxisome	71.43	71.04
OQU90259	Sorghum	peroxisome	71.43	70.65
TraesCS2D01G175900.1	Wheat	peroxisome	70.88	70.49
Os07t0616500-01	Rice	peroxisome	70.88	70.49
TraesCS2A01G168400.1	Wheat	peroxisome	70.88	70.49
VIT_09s0002g00810.t01	Wine grape	peroxisome	70.05	70.05
TraesCS5A01G266500.2	Wheat	peroxisome	70.05	69.67
Bra001536.1-P	Field mustard	peroxisome	68.96	69.53
Bra021535.1-P	Field mustard	peroxisome	69.23	69.42
Bra021533.1-P	Field mustard	peroxisome	68.96	69.15
Solyc03g122130.2.1	Tomato	peroxisome	65.11	69.1
AT3G14130.1	Thale cress	peroxisome	68.41	68.59
TraesCS5B01G266100.1	Wheat	peroxisome	68.68	68.49
PGSC0003DMT400058960	Potato	peroxisome	67.86	67.86
PGSC0003DMT400058920	Potato	peroxisome	67.58	67.77
AT3G14150.1	Thale cress	peroxisome	67.31	67.49
TraesCS5D01G274300.1	Wheat	peroxisome	67.86	67.49
Solyc03g122170.2.1	Tomato	peroxisome	63.19	67.06
Solyc03g122140.2.1	Tomato	peroxisome	66.76	66.94
PGSC0003DMT400058959	Potato	peroxisome	66.21	66.21
VIT_09s0002g00820.t01	Wine grape	peroxisome, plastid	70.88	62.02
GSMUA_Achr6P19880_001	Banana	peroxisome	61.81	60.98
GSMUA_Achr4P22900_001	Banana	peroxisome	25.0	59.09
PGSC0003DMT400058950	Potato	peroxisome	60.16	58.09
Zm00001d006868_P007	Maize	peroxisome	67.58	58.02
Bra036980.1-P	Field mustard	peroxisome	9.07	57.89
GSMUA_Achr7P07880_001	Banana	peroxisome, plasma membrane, unclear	57.97	57.49
Solyc03g122150.2.1	Tomato	peroxisome	22.25	52.94
TraesCS2B01G194600.3	Wheat	peroxisome	52.2	48.59
KRH25749	Soybean	vacuole	10.71	46.43
CDX98452	Canola	cytosol, nucleus, peroxisome	3.57	43.33
GSMUA_Achr7P01200_001	Banana	peroxisome	18.68	42.77
GSMUA_Achr7P01210_001	Banana	vacuole	17.58	33.33
Bra027370.1-P	Field mustard	vacuole	65.11	23.68

Protein Annotations

Gene3D:3.20.20.70	MapMan:50.1.1	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH	InterPro:FMN_HAD
InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr3G01940_001	EnsemblPlants:GSMUA_Achr3P01940_001
EnsemblPlants:GSMUA_Achr3T01940_001	InterPro:IPR013785	InterPro:IPR037396	UniProt:M0SB12	PFAM:PF01070	PIRSF:PIRSF000138
ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF67	SMART:SM01240	SUPFAM:SSF51395
UniParc:UPI000294CC41	SEG:seg	:	:	:	:

Description

Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G01940_001]

Coordinates

chr3:-:1300755..1305418

Molecular Weight (calculated)

39859.3 Da

IEP (calculated)

8.421

GRAVY (calculated)

-0.060

Length

364 amino acids

Sequence
(BLAST)

001: MEDGPVNLRE FQELAKRNLP KMYYDYFSGG AEDQFTLREN VEAFQRIMLR PRILVDVSKI DMSTTLLGYN MSSPILVAPT GSQQLAHPQG ELATARAAAA
101: CNAIMVLSFA SNYSLEDVAS TCNAVRFYQL YVFKRRDVSA TLLQRAERNG YKAIVVTVDT PRLGRREADE KNKMIIPRNS NLEGLISVDA DLTGGSKLEA
201: YASETLDPSL SWKDIEWLKS ITKLPIILKG IITAEDARKA VDAGVSGIVV SNHGGRQLDY TPPTISVLEE VVKAVSGAVP VLLDGGVRRG TDVFKALALG
301: AKAVMIGRPV VYGLAANGEH GVRSVIKMLQ NELELTMALA GCPTLRDITR NHVMINHERP RSLL

Best Arabidopsis Sequence Match ( AT3G14130.1 )
(BLAST)

001: MDQIVNVDEF QELAKQALPK MYYDFYNGGA EDQHTLNENV QAFRRIMFRP RVLVDVSNID MSTSMLGYPI SAPIMIAPTA MHKLAHPKGE IATAKAAAAC
101: NTIMIVSFMS TCTIEEVASS CNAVRFLQIY VYKRRDVTAQ IVKRAEKAGF KAIVLTVDVP RLGRREADIK NKMISPQLKN FEGLVSTEVR PNEGSGVEAF
201: ASSAFDASLS WKDIEWLRSI TKLPILVKGL LTREDALKAV EAGVDGIVVS NHGARQLDYS PATITVLEEV VHAVKGRIPV LLDGGVRRGT DVFKALALGA
301: QAVLIGRPIV YGLAAKGEDG VKKVIDMLKN EFEITMALSG CPTIDDVTRN HVRTENERIK SML

Arabidopsis Description

GLO4Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.