Factsheet for GSMUA_Achr6P19880_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P07880_001	Banana	peroxisome, plasma membrane, unclear	86.45	86.92
Os04t0623500-02	Rice	peroxisome	84.82	85.29
TraesCS2A01G467700.1	Wheat	golgi, peroxisome	80.49	80.49
TraesCS2B01G490700.1	Wheat	peroxisome	80.49	80.49
TraesCS2D01G467700.1	Wheat	peroxisome	80.22	80.22
GSMUA_Achr4P22900_001	Banana	peroxisome	32.25	77.27
Zm00001d002261_P003	Maize	mitochondrion	81.57	75.44
EES11443	Sorghum	peroxisome	82.93	73.73
EES11447	Sorghum	peroxisome	72.63	73.02
GSMUA_Achr7P01200_001	Banana	peroxisome	27.64	64.15
GSMUA_Achr3P01940_001	Banana	peroxisome	60.98	61.81
Zm00001d002260_P003	Maize	peroxisome	62.06	48.11
GSMUA_Achr7P01210_001	Banana	vacuole	20.05	38.54

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH	InterPro:FMN_HAD
InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G19880_001	EnsemblPlants:GSMUA_Achr6P19880_001
EnsemblPlants:GSMUA_Achr6T19880_001	InterPro:IPR013785	InterPro:IPR037396	UniProt:M0T8I6	PFAM:PF01070	PIRSF:PIRSF000138
ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF103	SMART:SM01240	SUPFAM:SSF51395
UniParc:UPI000295ECF8	SEG:seg	:	:	:	:

Description

Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G19880_001]

Coordinates

chr6:+:14202268..14206889

Molecular Weight (calculated)

40834.6 Da

IEP (calculated)

8.739

GRAVY (calculated)

-0.024

Length

369 amino acids

Sequence
(BLAST)

001: MSMEITNVCE YEEIAKQKLP KMIYDYYASG AEDQWTLKEN RNAFSRILFR PRILIDVSNI DMTTTVLGFN ISMPIMIAPT AMQKMAHPEG EYATARAASA
101: ANTIMTLSSW ATSSVEEVAS TGPGVRFFQL YVYKDRDVVR QLVKRAERAG FKAIVLTVDT PRLGRREADI KNRFTLPPFL TLKNFEDLDL GKMERTNDSG
201: LASYVASQVD RSLSWKDVKW LQTITSLPII VKGVMTAEDT RLAIQAGVAG IVVSNHGARQ LDYVPATINC LEEVVKAARG QVPVFLDGGI RRGTDVFKAL
301: ALGASGVFIG RPVVFALAAD GEAGVRKVLQ MLRDELELTM ALSGCTSLKE ITRNHIVTET EMPRTLSRL

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.