Factsheet for GSMUA_Achr4P22900_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	peroxisome
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P20310_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	GSMUA_Achr7P20310_001	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40892	Canola	peroxisome	77.92	69.36
HORVU2Hr1G060070.1	Barley	peroxisome	55.19	54.14
HORVU0Hr1G013900.4	Barley	peroxisome	73.38	34.56
CDX68646	Canola	peroxisome	78.57	33.89
CDY25425	Canola	peroxisome	78.57	33.89
CDX81437	Canola	peroxisome	78.57	33.89
GSMUA_Achr7P07880_001	Banana	peroxisome, plasma membrane, unclear	79.87	33.52
CDY33220	Canola	peroxisome	77.27	33.33
CDX75771	Canola	peroxisome	78.57	32.97
Bra001550.1-P	Field mustard	peroxisome	78.57	32.97
CDX82484	Canola	peroxisome	78.57	32.97
PGSC0003DMT400071115	Potato	cytosol	79.22	32.88
AT3G14415.2	Thale cress	peroxisome	79.22	32.71
CDY39114	Canola	peroxisome	77.92	32.7
CDY33221	Canola	peroxisome	77.92	32.7
Solyc07g056540.2.1	Tomato	plastid	78.57	32.61
Bra021556.1-P	Field mustard	peroxisome	77.27	32.43
CDY39115	Canola	peroxisome	77.27	32.43
Bra001551.1-P	Field mustard	peroxisome	75.32	32.4
GSMUA_Achr6P19880_001	Banana	peroxisome	77.27	32.25
AT3G14420.1	Thale cress	peroxisome	76.62	32.15
Bra027338.1-P	Field mustard	peroxisome	76.62	31.89
CDX98453	Canola	peroxisome	76.62	31.89
CDX97574	Canola	peroxisome	76.62	31.89
KRH13608	Soybean	nucleus	75.97	31.54
KRH43857	Soybean	peroxisome	75.97	31.54
Os07t0152900-01	Rice	peroxisome	75.32	31.44
CDX82483	Canola	peroxisome	75.97	31.37
KXG34415	Sorghum	peroxisome	74.03	30.89
EER93339	Sorghum	peroxisome	73.38	30.71
TraesCS5D01G432900.1	Wheat	peroxisome	73.38	30.54
TraesCS5B01G426500.1	Wheat	golgi	73.38	30.54
TraesCS5A01G424400.1	Wheat	peroxisome	73.38	30.54
TraesCS2D01G251800.2	Wheat	peroxisome, plastid	72.73	30.43
TraesCS2A01G250800.1	Wheat	peroxisome	72.73	30.43
Os03t0786100-01	Rice	peroxisome	72.73	30.35
Bra021555.1-P	Field mustard	peroxisome	67.53	29.97
CDX97573	Canola	peroxisome	74.03	29.92
VIT_10s0003g03830.t01	Wine grape	peroxisome	72.08	29.84
TraesCS2B01G264100.2	Wheat	peroxisome, plastid	72.73	29.79
GSMUA_Achr7P01210_001	Banana	vacuole	36.36	29.17
Zm00001d018810_P002	Maize	peroxisome, plastid	74.03	27.27
GSMUA_Achr3P01940_001	Banana	peroxisome	59.09	25.0
Bra027339.1-P	Field mustard	peroxisome	71.43	23.45
HORVU2Hr1G060010.5	Barley	peroxisome	55.84	23.06
CDX75772	Canola	mitochondrion	40.91	21.88
CDX98451	Canola	peroxisome	42.86	21.57
CDY25424	Canola	peroxisome	46.1	21.19
CDY11082	Canola	peroxisome	40.91	20.26
CDX81438	Canola	peroxisome	40.91	20.26
CDY40891	Canola	peroxisome	40.91	20.26
CDY16268	Canola	peroxisome	40.91	20.26
CDX68645	Canola	peroxisome	43.51	19.88
CDY35618	Canola	peroxisome	43.51	19.88
Os08t0198700-01	Rice	vacuole	2.6	5.71
Bra005793.1-P	Field mustard	peroxisome	3.9	5.13
Os04t0623600-01	Rice	extracellular	2.6	4.08
GSMUA_Achr7P01200_001	Banana	peroxisome	1.3	1.26

Protein Annotations

Gene3D:3.20.20.70	MapMan:50.1.1	InterPro:Aldolase_TIM	InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
EnsemblPlantsGene:GSMUA_Achr4G22900_001	EnsemblPlants:GSMUA_Achr4P22900_001	EnsemblPlants:GSMUA_Achr4T22900_001	InterPro:IPR013785	InterPro:IPR037396	UniProt:M0SRA1
PFAM:PF01070	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF103	SUPFAM:SSF51395
UniParc:UPI000295E7F4	:	:	:	:	:

Description

Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G22900_001]

Coordinates

chr4:-:23180322..23181157

Molecular Weight (calculated)

16247.9 Da

IEP (calculated)

6.785

GRAVY (calculated)

0.366

Length

154 amino acids

Sequence
(BLAST)

001: MLITTMPIFV KGVLTAEDTR LAIQAGAAGI TVSNHGARQL DYVPATISAL EEVVKAAQGR VPVFLDGGAR RGTDVFKALA LGASGVFIGR PVAFALAAEG
101: EAGVRKVLQI LRDEFELTMA SSGCTSPREI TRSHIVTEAD SHLPACLEVM MLLR

Best Arabidopsis Sequence Match ( AT3G14415.2 )
(BLAST)

001: MEITNVTEYD AIAKAKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVNKIDM ATTVLGFKIS MPIMVAPTAF QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRKVVEQL VRRAEKAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEASIDQIA
201: NDSGLASYVA GQIDRTLSWK DIQWLQTITN MPILVKGVLT GEDARIAIQA GAAGIIVSNH GARQLDYVPA TISALEEVVK ATQGRVPVFL DGGVRRGTDV
301: FKALALGASG IFIGRPVVFA LAAEGEAGVK KVLQMLRDEF ELTMALSGCR SLSEITRNHI VTEWDTPRHL PRL

Arabidopsis Description

GOX2 [Source:UniProtKB/TrEMBL;Acc:A0A178VD55]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.