Factsheet for HORVU0Hr1G013900.4

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	peroxisome, plastid
iPSORT:	plastid
MultiLoc:	peroxisome
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G049220.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	HORVU7Hr1G049220.10	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G432900.1	Wheat	peroxisome	96.94	85.68
TraesCS5B01G426500.1	Wheat	golgi	96.94	85.68
TraesCS5A01G424400.1	Wheat	peroxisome	96.64	85.41
EER93339	Sorghum	peroxisome	88.69	78.8
Os03t0786100-01	Rice	peroxisome	88.07	78.05
GSMUA_Achr7P07880_001	Banana	peroxisome, plasma membrane, unclear	85.32	76.02
Solyc07g056540.2.1	Tomato	plastid	86.24	76.01
PGSC0003DMT400071115	Potato	cytosol	85.63	75.47
KRH43857	Soybean	peroxisome	85.32	75.2
KRH13608	Soybean	nucleus	85.02	74.93
VIT_19s0093g00510.t01	Wine grape	peroxisome	84.71	74.66
AT3G14420.1	Thale cress	peroxisome	83.18	74.11
AT3G14415.2	Thale cress	peroxisome	84.1	73.73
GSMUA_Achr4P22900_001	Banana	peroxisome	34.56	73.38
VIT_10s0003g03830.t01	Wine grape	peroxisome	82.87	72.85
CDY70372	Canola	cytosol, mitochondrion, plastid	24.16	67.52
CDX88442	Canola	cytosol, mitochondrion, plastid	24.16	67.52
HORVU2Hr1G060010.5	Barley	peroxisome	76.45	67.02
Os08t0198700-01	Rice	vacuole	14.07	65.71
HORVU2Hr1G060070.1	Barley	peroxisome	29.36	61.15
CDY52449	Canola	mitochondrion	35.78	53.67
Bra035032.1-P	Field mustard	mitochondrion	35.78	53.67
CDX86782	Canola	cytosol, peroxisome, plastid	35.78	52.47
HORVU2Hr1G030930.2	Barley	peroxisome	57.8	51.64
HORVU6Hr1G051600.1	Barley	peroxisome, plastid	17.74	50.88
Os04t0623600-01	Rice	extracellular	10.7	35.71

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	UniProt:A0A287E164	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH
InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:HORVU0Hr1G013900
EnsemblPlants:HORVU0Hr1G013900.4	InterPro:IPR013785	InterPro:IPR037396	PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557
PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80	SUPFAM:SSF51395	UniParc:UPI000B46AC29	SEG:seg

Description

No Description!

Coordinates

chrchrUn:+:78076432..78079845

Molecular Weight (calculated)

35247.0 Da

IEP (calculated)

9.773

GRAVY (calculated)

0.115

Length

327 amino acids

Sequence
(BLAST)

001: ACMTFRPRIL IDVSTIDMTT SVLGMKISMP IMISPTAFQK MAHPEAGEYA TARAASAAGT VMTLSSWATS SVEEVASTGP GIRFFQLYVY KNRKVVAQLV
101: KRAEKAGFKA IALTVDTPRL GRREADIKNR FVLPPGLTLK NFEGLDLGTM DQANDSGLAS YVAGQIDRTL SWKDVKWLQS ITTMPILVKG VITAEDARLA
201: VHSGAAGIIV SNHGARQLDY VPATISALEE VVTAAQGRIP VYLDGGVRRG TDVFKALALG ASGVFIGRPV VFALAAEGEA GVRNVLRMMR EEFELTMALG
301: GCTKLSDITR EHIFTEGDRL GRPLPRM

Best Arabidopsis Sequence Match ( AT3G14415.1 )
(BLAST)

001: MEITNVTEYD AIAKAKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVNKIDM ATTVLGFKIS MPIMVAPTAF QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRKVVEQL VRRAEKAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDIQWLQ TITNMPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRV PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFALAAEGE AGVKKVLQML RDEFELTMAL SGCRSLSEIT RNHIVTEWDT PRHLPRL

Arabidopsis Description

GOX2 [Source:UniProtKB/TrEMBL;Acc:A0A178VD55]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.