Factsheet for GSMUA_Achr7P07880_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, unclear, plasma membrane

Predictor Summary:

cytosol 1
peroxisome 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 20177697
plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0093g00510.t01	Wine grape	peroxisome	93.73	92.72
EER93339	Sorghum	peroxisome	88.56	88.32
Os07t0152900-01	Rice	peroxisome	88.56	88.08
KXG34415	Sorghum	peroxisome	88.56	88.08
Os03t0786100-01	Rice	peroxisome	87.47	86.99
GSMUA_Achr6P19880_001	Banana	peroxisome	86.92	86.45
TraesCS2A01G250800.1	Wheat	peroxisome	86.65	86.41
TraesCS2D01G251800.2	Wheat	peroxisome, plastid	86.65	86.41
TraesCS5B01G426500.1	Wheat	golgi	86.38	85.68
TraesCS5D01G432900.1	Wheat	peroxisome	86.38	85.68
TraesCS5A01G424400.1	Wheat	peroxisome	86.1	85.41
HORVU0Hr1G013900.4	Barley	peroxisome	76.02	85.32
TraesCS2B01G264100.2	Wheat	peroxisome, plastid	86.65	84.57
GSMUA_Achr4P22900_001	Banana	peroxisome	33.52	79.87
Zm00001d018810_P002	Maize	peroxisome, plastid	88.01	77.27
HORVU2Hr1G060010.5	Barley	peroxisome	78.47	77.21
Os08t0198700-01	Rice	vacuole	14.17	74.29
GSMUA_Achr7P01200_001	Banana	peroxisome	29.97	69.18
HORVU2Hr1G060070.1	Barley	peroxisome	25.89	60.51
GSMUA_Achr3P01940_001	Banana	peroxisome	57.49	57.97
Os04t0623600-01	Rice	extracellular	11.72	43.88
GSMUA_Achr7P01210_001	Banana	vacuole	20.44	39.06

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH	InterPro:FMN_HAD
InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr7G07880_001	EnsemblPlants:GSMUA_Achr7P07880_001
EnsemblPlants:GSMUA_Achr7T07880_001	InterPro:IPR013785	InterPro:IPR037396	UniProt:M0TFM8	PFAM:PF01070	PIRSF:PIRSF000138
ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80	SUPFAM:SSF51395	UniParc:UPI0002962954
SEG:seg	:	:	:	:	:

Description

Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G07880_001]

Coordinates

chr7:-:5862715..5867669

Molecular Weight (calculated)

40321.1 Da

IEP (calculated)

9.767

GRAVY (calculated)

0.014

Length

367 amino acids

Sequence
(BLAST)

001: MEITNVMEYE AVAKQKLPKM VFDYYASGAE DQWTLKENRE AFSRILFRPR ILIDVSRIDM TTTVLGFKIS MPIMIAPTAM QKMAHPEGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKDRNVVAQL VRRAERAGFK AIALTVDTPR LGRREADIKN RFTLPPFLTL KNFEGLDLGK MDKADDSGLA
201: SYVAGQIDRT LSWKDVKWLQ TITTMPILVK GVLTAEDTRL AIQSGAAGII VSNHGARQLD YVPATITALE EVVKAAQGRL PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAAGE AGIRNVLQML RDEFELTMAL SGCTSLKEIT RSHIVTEAER NRPVPRL

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.