Factsheet for Zm00001d018810_P002

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plastid
Any Predictor:	peroxisome
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d031327_P009
Zm00001d052851_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	Zm00001d031327_P009	AT5G56290.1	21798944
AT3G14420.1	Zm00001d052851_P002	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34415	Sorghum	peroxisome	85.41	96.75
Os07t0152900-01	Rice	peroxisome	82.06	92.95
TraesCS2D01G251800.2	Wheat	peroxisome, plastid	79.43	90.22
TraesCS2A01G250800.1	Wheat	peroxisome	79.43	90.22
TraesCS2B01G264100.2	Wheat	peroxisome, plastid	79.43	88.3
GSMUA_Achr7P07880_001	Banana	peroxisome, plasma membrane, unclear	77.27	88.01
KRH43857	Soybean	peroxisome	77.03	86.79
AT3G14420.1	Thale cress	peroxisome	76.08	86.65
KRH13608	Soybean	nucleus	76.56	86.25
Solyc07g056540.2.1	Tomato	plastid	76.32	85.98
PGSC0003DMT400071115	Potato	cytosol	76.08	85.71
VIT_19s0093g00510.t01	Wine grape	peroxisome	75.84	85.44
VIT_10s0003g03830.t01	Wine grape	peroxisome	74.88	84.14
AT3G14415.2	Thale cress	peroxisome	74.64	83.65
Zm00001d002261_P003	Maize	mitochondrion	71.77	75.19
GSMUA_Achr4P22900_001	Banana	peroxisome	27.27	74.03
CDY70372	Canola	cytosol, mitochondrion, plastid	18.9	67.52
CDX88442	Canola	cytosol, mitochondrion, plastid	18.9	67.52
Bra035032.1-P	Field mustard	mitochondrion	30.14	57.8
CDY52449	Canola	mitochondrion	30.14	57.8
CDX86782	Canola	cytosol, peroxisome, plastid	30.62	57.4
Zm00001d006868_P007	Maize	peroxisome	50.0	49.29
Zm00001d002260_P003	Maize	peroxisome	52.63	46.22
Zm00001d023759_P001	Maize	mitochondrion, nucleus, peroxisome	11.0	17.69
Zm00001d024312_P001	Maize	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	4.31	15.13

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	UniProt:A0A1D6HSJ1	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH
InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785
InterPro:IPR037396	ProteinID:ONM51381.1	ProteinID:ONM51382.1	PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557
PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80	SUPFAM:SSF51395	UniParc:UPI00084275F7	EnsemblPlantsGene:Zm00001d018810
EnsemblPlants:Zm00001d018810_P002	EnsemblPlants:Zm00001d018810_T002	SEG:seg	:	:	:

Description

glycolate oxidase1 glycolate oxidase1

Coordinates

chr7:+:5842587..5845546

Molecular Weight (calculated)

45346.9 Da

IEP (calculated)

8.599

GRAVY (calculated)

0.070

Length

418 amino acids

Sequence
(BLAST)

001: MGEITNVMEY QAIAKQKLPK MAYDYYASGA EDEWTLQENR EAFSRILFRP RILIDVSKID MTTTVLGFKI SMPIMVAPTA MQKMAHPDGE NATARAAAAA
101: GTIMTLSSWA TSSVEEVAST GPGIRFFQLY VYKDRKVVEQ LVRRAERAGF KAIALTVDTP RLGRREADIK NRFVLPPHLT LKNFEGLDLG KMDQLNVCAP
201: IEHGQAADSG LASYVAGQVD RTLSWKDVKW LQTITTLPIL VKGVLTAEDT RLAVANGAAG IIVSNHGARQ LDYVPATISA LEEVVKAARG QLPVFVDGGV
301: RRGTDVFKAL ALGAAGVFVS YLPTLLPSAD TTTAQTSNNV FIIRLPGLPS SDWLTYVGRP VVFSLAAAGE AGVSNVLRML RDEFELTMAL SGCTSLAEIT
401: RKHIITESDK LSAIPSRL

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.