Factsheet for VIT_19s0093g00510.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P07880_001	Banana	peroxisome, plasma membrane, unclear	92.72	93.73
VIT_10s0003g03830.t01	Wine grape	peroxisome	91.11	90.86
Os07t0152900-01	Rice	peroxisome	86.25	86.72
EER93339	Sorghum	peroxisome	85.44	86.14
KXG34415	Sorghum	peroxisome	85.18	85.64
Os03t0786100-01	Rice	peroxisome	85.18	85.64
TraesCS2A01G250800.1	Wheat	peroxisome	84.37	85.05
TraesCS2D01G251800.2	Wheat	peroxisome, plastid	84.37	85.05
HORVU0Hr1G013900.4	Barley	peroxisome	74.66	84.71
TraesCS5B01G426500.1	Wheat	golgi	84.1	84.32
TraesCS5D01G432900.1	Wheat	peroxisome	84.1	84.32
TraesCS5A01G424400.1	Wheat	peroxisome	83.83	84.05
TraesCS2B01G264100.2	Wheat	peroxisome, plastid	84.37	83.24
HORVU2Hr1G060010.5	Barley	peroxisome	76.55	76.14
Zm00001d018810_P002	Maize	peroxisome, plastid	85.44	75.84
Os08t0198700-01	Rice	vacuole	14.29	75.71
VIT_09s0002g00810.t01	Wine grape	peroxisome	62.53	63.74
HORVU2Hr1G060070.1	Barley	peroxisome	24.53	57.96
VIT_09s0002g00820.t01	Wine grape	peroxisome, plastid	62.26	55.53
Os04t0623600-01	Rice	extracellular	11.59	43.88

Protein Annotations

MapMan:1.3.2	EntrezGene:100244701	wikigene:100244701	Gene3D:3.20.20.70	EMBL:AM443586	InterPro:Aldolase_TIM
InterPro:Alpha-hydoxy_acid_DH_FMN	ProteinID:CAN67413	ProteinID:CAN67413.1	ProteinID:CBI32921	ProteinID:CBI32921.3	UniProt:D7TQZ8
InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	EMBL:FN596009	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491
GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396	EntrezGene:LOC100244701	wikigene:LOC100244701	PFAM:PF01070
PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF103	SMART:SM01240
SUPFAM:SSF51395	TIGR:TC52919	UniParc:UPI00015CCD98	ArrayExpress:VIT_19s0093g00510	EnsemblPlantsGene:VIT_19s0093g00510	EnsemblPlants:VIT_19s0093g00510.t01
unigene:Vvi.3898	RefSeq:XP_002277249	RefSeq:XP_002277249.1	RefSeq:XP_010644816.1	SEG:seg	:

Description

No Description!

Coordinates

chr19:+:17510524..17514468

Molecular Weight (calculated)

40857.8 Da

IEP (calculated)

9.576

GRAVY (calculated)

0.008

Length

371 amino acids

Sequence
(BLAST)

001: MEITNVTEYE AIAKQKLPKM VFDYYASGAE DQWTLYQNRH AFSQILFRPR ILIDVSKIDM TTTVLGFKIS MPIMIAPTAM QKMAHPEGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKDRHVVAQL VRRAERAGFK AIALTVDTPR LGRREADIKN RFTLPPFLTL KNFEGLDLGK MDKADDSGLA
201: SYVAGQIDRT LSWKDVKWLQ TITNLPILVK GVLTAEDTRL AIQAGAAGII VSNHGARQLD YVPATIMALE EVVKAAQGRV PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML REEFELTMAL SGCRSLKEIT RDHIVTEWEV PPPGSRPLPR L

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.