Factsheet for VIT_10s0003g03830.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g01940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	VIT_19s0015g01940.t01	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0093g00510.t01	Wine grape	peroxisome	90.86	91.11
AT3G14420.1	Thale cress	peroxisome	89.78	91.01
PGSC0003DMT400071115	Potato	cytosol	90.32	90.57
KRH13608	Soybean	nucleus	90.32	90.57
CDY33220	Canola	peroxisome	86.83	90.48
KRH43857	Soybean	peroxisome	90.05	90.3
Bra021556.1-P	Field mustard	peroxisome	88.98	90.19
CDY39115	Canola	peroxisome	88.98	90.19
Solyc07g056540.2.1	Tomato	plastid	89.78	90.03
CDX98453	Canola	peroxisome	89.52	90.0
CDX97574	Canola	peroxisome	89.52	90.0
Bra021555.1-P	Field mustard	peroxisome	83.87	89.91
CDX75771	Canola	peroxisome	88.44	89.65
CDX82484	Canola	peroxisome	88.44	89.65
CDX68646	Canola	peroxisome	86.02	89.64
CDX81437	Canola	peroxisome	86.02	89.64
CDY25425	Canola	peroxisome	86.02	89.64
Bra027338.1-P	Field mustard	peroxisome	88.98	89.46
CDY33221	Canola	peroxisome	88.17	89.37
CDY39114	Canola	peroxisome	88.17	89.37
Bra001550.1-P	Field mustard	peroxisome	87.9	89.1
CDX82483	Canola	peroxisome	89.25	89.01
Bra001551.1-P	Field mustard	peroxisome	85.22	88.55
AT3G14415.2	Thale cress	peroxisome	87.37	87.13
Os07t0152900-01	Rice	peroxisome	84.95	85.64
EER93339	Sorghum	peroxisome	84.68	85.6
CDY11082	Canola	peroxisome	71.51	85.53
CDY40891	Canola	peroxisome	71.51	85.53
CDX81438	Canola	peroxisome	71.51	85.53
CDY16268	Canola	peroxisome	71.51	85.53
KXG34415	Sorghum	peroxisome	84.41	85.09
Os03t0786100-01	Rice	peroxisome	83.87	84.55
TraesCS2D01G251800.2	Wheat	peroxisome, plastid	83.06	83.97
TraesCS2A01G250800.1	Wheat	peroxisome	83.06	83.97
TraesCS5A01G424400.1	Wheat	peroxisome	83.06	83.51
TraesCS5D01G432900.1	Wheat	peroxisome	83.06	83.51
TraesCS5B01G426500.1	Wheat	golgi	83.06	83.51
HORVU0Hr1G013900.4	Barley	peroxisome	72.85	82.87
CDX98451	Canola	peroxisome	68.01	82.68
TraesCS2B01G264100.2	Wheat	peroxisome, plastid	83.33	82.45
CDY40892	Canola	peroxisome	37.9	81.5
CDY25424	Canola	peroxisome	73.39	81.49
Bra005793.1-P	Field mustard	peroxisome	25.54	81.2
CDX97573	Canola	peroxisome	82.26	80.31
CDX68645	Canola	peroxisome	72.58	80.12
CDY35618	Canola	peroxisome	72.58	80.12
HORVU2Hr1G060010.5	Barley	peroxisome	76.08	75.87
Zm00001d018810_P002	Maize	peroxisome, plastid	84.14	74.88
Os08t0198700-01	Rice	vacuole	13.98	74.29
GSMUA_Achr4P22900_001	Banana	peroxisome	29.84	72.08
CDX75772	Canola	mitochondrion	50.54	65.28
VIT_09s0002g00810.t01	Wine grape	peroxisome	63.71	65.11
Bra027339.1-P	Field mustard	peroxisome	81.45	64.61
HORVU2Hr1G060070.1	Barley	peroxisome	24.73	58.6
VIT_09s0002g00820.t01	Wine grape	peroxisome, plastid	63.44	56.73
Os04t0623600-01	Rice	extracellular	11.56	43.88

Protein Annotations

MapMan:1.3.2	EntrezGene:100232932	wikigene:100232932	Gene3D:3.20.20.70	ProteinID:AAP69813	ProteinID:AAP69813.1
EMBL:AM451790	EMBL:AY233203	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	ProteinID:CAN74334	ProteinID:CAN74334.1
ProteinID:CBI30923	ProteinID:CBI30923.3	UniProt:D7TKA1	InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS
EMBL:FN595992	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	EntrezGene:GOX	wikigene:GOX
InterPro:IPR013785	InterPro:IPR037396	PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349
PANTHER:PTHR10578	PANTHER:PTHR10578:SF103	SUPFAM:SSF51395	TIGR:TC52568	UniParc:UPI00015CAD36	ArrayExpress:VIT_10s0003g03830
EnsemblPlantsGene:VIT_10s0003g03830	EnsemblPlants:VIT_10s0003g03830.t01	unigene:Vvi.7060	RefSeq:XP_002278104	RefSeq:XP_002278104.1	SEG:seg

Description

No Description!

Coordinates

chr10:-:6527282..6532283

Molecular Weight (calculated)

40893.7 Da

IEP (calculated)

9.816

GRAVY (calculated)

-0.007

Length

372 amino acids

Sequence
(BLAST)

001: MADTEITNVT EYEAIAKAKL PKMAFDYYAS GAEDQWTLRE NRNAFSRILF RPRILIDVSK IDMTTTVLGF KISMPIMIAP TAFQKMAHPE GEYATARAAS
101: AAGTIMTLSS WATSSVEEVA STGPGIRFFQ LYVYKDRHVV AQLVRRAERA GFKAIALTVD TPRLGRREAD IKNRFTLPPF LTLKNFEGLD LGKMDKADDS
201: GLASYVAGQI DRSLSWKDVK WLQTITKLPI LVKGVLTAED ARIAVNVGAA GIIVSNHGAR QLDYVPATIM ALEEVVKATQ GRIPVFLDGG VRRGTDVFKA
301: LALGASGIFI GRPVVYSLAA DGEAGVRKAL QMLRDEFELT MALSGCRSLK EISRNHIMTD WDAPHILPKP RL

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.