Factsheet for Bra021556.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002826.1-P
Bra028938.1-P
Bra035613.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	Bra002826.1-P	AT5G56290.1	21798944
AT3G14420.1	Bra028938.1-P	AT5G56290.1	21798944
AT3G14420.1	Bra035613.1-P	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39115	Canola	peroxisome	100.0	100.0
CDY33220	Canola	peroxisome	97.28	100.0
Bra027338.1-P	Field mustard	peroxisome	98.64	97.84
AT3G14420.1	Thale cress	peroxisome	97.55	97.55
Bra021555.1-P	Field mustard	peroxisome	91.83	97.12
Bra001550.1-P	Field mustard	peroxisome	96.46	96.46
Bra001551.1-P	Field mustard	peroxisome	92.92	95.25
Solyc07g056540.2.1	Tomato	plastid	92.64	91.64
PGSC0003DMT400071115	Potato	cytosol	91.28	90.3
VIT_10s0003g03830.t01	Wine grape	peroxisome	90.19	88.98
KRH43857	Soybean	peroxisome	89.92	88.95
KRH13608	Soybean	nucleus	89.1	88.14
Bra005793.1-P	Field mustard	peroxisome	27.79	87.18
Bra012602.1-P	Field mustard	peroxisome	85.83	85.6
Bra013299.1-P	Field mustard	peroxisome	79.84	80.05
GSMUA_Achr4P22900_001	Banana	peroxisome	32.43	77.27
Bra027339.1-P	Field mustard	peroxisome	89.1	69.72
Bra021533.1-P	Field mustard	peroxisome	59.67	60.33
Bra021535.1-P	Field mustard	peroxisome	58.86	59.5
Bra001536.1-P	Field mustard	peroxisome	56.13	57.06
Bra035032.1-P	Field mustard	mitochondrion	33.79	56.88
Bra036980.1-P	Field mustard	peroxisome	8.72	56.14
Bra027370.1-P	Field mustard	vacuole	55.31	20.28

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	EnsemblPlantsGene:Bra021556	EnsemblPlants:Bra021556.1
EnsemblPlants:Bra021556.1-P	InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491
GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396	UniProt:M4DYG0	PFAM:PF01070	PIRSF:PIRSF000138
ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80	SUPFAM:SSF51395	UniParc:UPI0002544370
SEG:seg	:	:	:	:	:

Description

AT3G14420 (E=1e-192) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative

Coordinates

chrA01:-:24539130..24541142

Molecular Weight (calculated)

40391.9 Da

IEP (calculated)

9.409

GRAVY (calculated)

-0.069

Length

367 amino acids

Sequence
(BLAST)

001: MEITNVTEYE AIAKEKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTILGFKIS MPIMVAPTAM QKMAHPEGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRKVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITSMPILVK GVITGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIT RNHITTEWDT PRPSARL

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.