Factsheet for Bra012602.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55631	Canola	peroxisome	99.73	99.73
CDY01535	Canola	peroxisome	99.46	99.46
AT4G18360.4	Thale cress	peroxisome	98.1	98.1
Bra013299.1-P	Field mustard	peroxisome	92.93	93.44
Bra021555.1-P	Field mustard	peroxisome	81.25	86.17
Bra021556.1-P	Field mustard	peroxisome	85.6	85.83
Bra027338.1-P	Field mustard	peroxisome	85.6	85.14
PGSC0003DMT400054730	Potato	peroxisome	85.33	84.64
Bra001550.1-P	Field mustard	peroxisome	84.24	84.47
KRH42555	Soybean	endoplasmic reticulum	84.51	84.05
KRH42560	Soybean	peroxisome	82.88	83.33
Solyc10g007600.2.1	Tomato	plastid	83.97	83.29
Bra001551.1-P	Field mustard	peroxisome	80.98	83.24
KRH42553	Soybean	endoplasmic reticulum	82.88	82.88
KRH58663	Soybean	peroxisome	82.88	82.88
KRH42559	Soybean	cytosol	6.79	80.65
Bra005793.1-P	Field mustard	peroxisome	25.54	80.34
KRH58657	Soybean	peroxisome, plastid	63.86	78.86
KRH42558	Soybean	peroxisome	43.75	78.54
KRH42554	Soybean	peroxisome	62.23	75.58
Bra027339.1-P	Field mustard	peroxisome	79.62	62.47
Bra021533.1-P	Field mustard	peroxisome	59.24	60.06
Bra036980.1-P	Field mustard	peroxisome	9.24	59.65
Bra021535.1-P	Field mustard	peroxisome	58.42	59.23
Bra001536.1-P	Field mustard	peroxisome	56.52	57.62
Bra035032.1-P	Field mustard	mitochondrion	32.88	55.5
Bra027370.1-P	Field mustard	vacuole	55.98	20.58

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	EnsemblPlantsGene:Bra012602	EnsemblPlants:Bra012602.1
EnsemblPlants:Bra012602.1-P	InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491
GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396	UniProt:M4D7Z2	PFAM:PF01070	PIRSF:PIRSF000138
ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF103	SUPFAM:SSF51395	UniParc:UPI0001B83765

Description

AT4G18360 (E=5e-204) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative

Coordinates

chrA03:-:23284284..23286367

Molecular Weight (calculated)

40614.3 Da

IEP (calculated)

8.917

GRAVY (calculated)

-0.040

Length

368 amino acids

Sequence
(BLAST)

001: MEITNVMEYE KIAKEKLPKM VYDYYASGAE DQWTLQENRN AFSRILFRPR ILIDVSKIDV STTVLGFNIS MPIMVAPTAM QKMAHPDGEL ATARATSAAG
101: TIMTLSSWAT CSVEEVASTG PGIRFFQLYV YKDRNVVRQL VKRAEEAGFK AIALTVDTPR LGRRESDIKN RFALPRGLTL KNFEGLDLGK IDKTNDSGLA
201: SYVAGQVDQS LSWKDIKWLQ SITSLPILVK GVITAEDARI AVEYGAAGII VSNHGARQLD YVPATIMALE EVVKAVEGRL PVFLDGGVRR GTDVFKALAL
301: GASGVFVGRP SLFSLAADGE AGVRKMLQML RDEFELTMAL SGCRSLREIS RNHIKTDWDF PHYLPAKL

Best Arabidopsis Sequence Match ( AT4G18360.1 )
(BLAST)

001: MEITNVMEYE KIAKEKLPKM VYDYYASGAE DQWTLQENRN AFSRILFRPR ILIDVSKIDV STTVLGFNIS MPIMIAPTAM QKMAHPDGEL ATARATSAAG
101: TIMTLSSWAT CSVEEVASTG PGIRFFQLYV YKDRNVVIQL VKRAEEAGFK AIALTVDTPR LGRRESDIKN RFALPRGLTL KNFEGLDLGK IDKTNDSGLA
201: SYVAGQVDQS LSWKDIKWLQ SITSLPILVK GVITAEDARI AVEYGAAGII VSNHGARQLD YVPATIVALE EVVKAVEGRI PVFLDGGVRR GTDVFKALAL
301: GASGVFVGRP SLFSLAADGE AGVRKMLQML RDEFELTMAL SGCRSLREIS RTHIKTDWDT PHYLSAKL

Arabidopsis Description

GLO5Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 [Source:UniProtKB/Swiss-Prot;Acc:O49506]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.