CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
peroxisome 6

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42560	Soybean	peroxisome	96.49	97.54
KRH58663	Soybean	peroxisome	94.59	95.11
KRH42553	Soybean	endoplasmic reticulum	92.97	93.48
KRH42559	Soybean	cytosol	7.57	90.32
KRH58657	Soybean	peroxisome, plastid	72.7	90.27
KRH42558	Soybean	peroxisome	48.92	88.29
KRH13608	Soybean	nucleus	87.3	87.06
KRH43857	Soybean	peroxisome	87.03	86.79
AT4G18360.4	Thale cress	peroxisome	84.59	85.05
PGSC0003DMT400019434	Potato	peroxisome	84.59	85.05
KRH42554	Soybean	peroxisome	69.46	84.82
Bra012602.1-P	Field mustard	peroxisome	84.05	84.51
PGSC0003DMT400054730	Potato	peroxisome	83.51	83.29
Bra013299.1-P	Field mustard	peroxisome	80.0	80.87
KRH25749	Soybean	vacuole	15.41	67.86
Solyc03g122160.1.1	Tomato	cytosol, nucleus, peroxisome	15.41	54.81
CDX96897	Canola	peroxisome	23.24	49.43

Protein Annotations

MapMan:1.3.2	EntrezGene:100170736	Gene3D:3.20.20.70	EMBL:ACUP02004813	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN
InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	EnsemblPlantsGene:GLYMA_08G096800	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491
GO:GO:0055114	UniProt:I1KRU6	InterPro:IPR013785	InterPro:IPR037396	EnsemblPlants:KRH42555	ProteinID:KRH42555
ProteinID:KRH42555.1	PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578
PANTHER:PTHR10578:SF103	SMART:SM01240	SUPFAM:SSF51395	UniParc:UPI0002338B0E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:7418053..7423089

Molecular Weight (calculated)

40674.6 Da

IEP (calculated)

9.614

GRAVY (calculated)

0.034

Length

370 amino acids

Sequence
(BLAST)

001: MKMEMITNVT EYEAIAKEKL PKMVYDYYAS GAEDQWTLKE NRNAFSRILF RPRILVDVSK IDLTATVLGF KISMPIMIAP TAMQKMAHPE GELATARAAS
101: AAGTIMTLSS WATSSVEEVA STGPDIRFFQ LYVFKDRNVV AQLVRRAERA GFKAIALTVD TPILGRREAD IKNRFTLPPN LVLKNFEGLD LGKLDKTSDS
201: GLASYVAGQI DRSLNWKDIK WLQSITSLPI LVKGVLTAED TRLAIQAGAA GIIVSNHGAR QLDYVPATIM ALEEVVKAAQ GKIPVFLDGG IRRGTDVFKA
301: LALGAAGVFI GRPVVFSLAA DGETGVRKVL QMLRDEFELT MALSGCRSLK EITRDHVVTE WDHPRFSPKL

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.