CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

cytosol 2
plastid 3
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42559	Soybean	cytosol	9.4	90.32
KRH42560	Soybean	peroxisome	90.27	73.5
KRH42555	Soybean	endoplasmic reticulum	90.27	72.7
KRH42553	Soybean	endoplasmic reticulum	88.59	71.74
KRH58663	Soybean	peroxisome	88.25	71.47
KRH13608	Soybean	nucleus	81.88	65.77
KRH43857	Soybean	peroxisome	81.54	65.5
PGSC0003DMT400019434	Potato	peroxisome	80.87	65.49
AT4G18360.4	Thale cress	peroxisome	79.53	64.4
PGSC0003DMT400054730	Potato	peroxisome	79.87	64.15
Bra012602.1-P	Field mustard	peroxisome	78.86	63.86
Bra013299.1-P	Field mustard	peroxisome	77.18	62.84
KRH42554	Soybean	peroxisome	62.42	61.39
KRH42558	Soybean	peroxisome	39.26	57.07
Solyc03g122160.1.1	Tomato	cytosol, nucleus, peroxisome	19.13	54.81
CDX96897	Canola	peroxisome	27.18	46.55
KRH25749	Soybean	vacuole	9.06	32.14

Protein Annotations

Gene3D:3.20.20.70	MapMan:50.1.1	EMBL:ACUP02003280	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH
InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	EnsemblPlantsGene:GLYMA_05G141300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114
InterPro:IPR013785	InterPro:IPR037396	UniProt:K7KQ62	ProteinID:KRH58656.1	EnsemblPlants:KRH58657	ProteinID:KRH58657
ProteinID:KRH58657.1	ProteinID:KRH58658.1	ProteinID:KRH58659.1	ProteinID:KRH58660.1	PFAM:PF01070	ScanProsite:PS00557
PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF103	SUPFAM:SSF51395	UniParc:UPI0002948CA8	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:33467190..33473643

Molecular Weight (calculated)

32360.4 Da

IEP (calculated)

9.850

GRAVY (calculated)

0.088

Length

298 amino acids

Sequence
(BLAST)

001: MIAPTAMQKM AHPEGELATA RAASAAGTIM TLSSTATSSV EEVASTGPGI RFFQLYVLKD RNVVAQVVRR AEKAGFKAIT LTVDSPILGR READIKNRFT
101: LPPNLVLKNF EGLDLGKLNK ITFQTSDSFA ASYAAELYDR SLNWKDIKWI QTITSLPILL KGVLTPEDTM IAIQAGAAGI IVSNHGARQL DYVPATIMAL
201: EEVVKATQGR IPVFLDGGIR RGTDVFKALA LGAAGVFIGR PVVFSLAADG EAGVRKVLQM LRDEFELTMA LSGCRSLKEI TRDHVLTEWD RPRFSPKL

Best Arabidopsis Sequence Match ( AT3G14420.1 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.