CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
peroxisome 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	peroxisome

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42555	Soybean	endoplasmic reticulum	93.48	92.97
KRH42560	Soybean	peroxisome	92.12	92.62
KRH58663	Soybean	peroxisome	90.76	90.76
KRH42559	Soybean	cytosol	7.61	90.32
KRH58657	Soybean	peroxisome, plastid	71.74	88.59
KRH42558	Soybean	peroxisome	47.55	85.37
KRH43857	Soybean	peroxisome	84.78	84.1
KRH13608	Soybean	nucleus	84.51	83.83
AT4G18360.4	Thale cress	peroxisome	83.15	83.15
Bra012602.1-P	Field mustard	peroxisome	82.88	82.88
KRH42554	Soybean	peroxisome	68.21	82.84
PGSC0003DMT400019434	Potato	peroxisome	82.34	82.34
PGSC0003DMT400054730	Potato	peroxisome	82.88	82.21
Bra013299.1-P	Field mustard	peroxisome	79.35	79.78
KRH25749	Soybean	vacuole	15.49	67.86
Solyc03g122160.1.1	Tomato	cytosol, nucleus, peroxisome	15.49	54.81
CDX96897	Canola	peroxisome	22.83	48.28

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	UniProt:A0A0R0IPJ7	EMBL:ACUP02004813	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN
InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	EnsemblPlantsGene:GLYMA_08G096600	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491
GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396	EnsemblPlants:KRH42553	ProteinID:KRH42553	ProteinID:KRH42553.1
PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF103
SUPFAM:SSF51395	UniParc:UPI0002338B0D	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:7403857..7408541

Molecular Weight (calculated)

40579.3 Da

IEP (calculated)

9.226

GRAVY (calculated)

0.029

Length

368 amino acids

Sequence
(BLAST)

001: MDMITNVNEY EAIAKEKLPK MVYDYYASGA EDQWTLKENQ NAFSRILFRP RILVDVSKID LTATVLGFKI SMPIMIAPTA MQKMAHPEGE LATARAASAA
101: GTIMTLSSWA TSSVEEVAST GPDIRFFQLY VFKDRNVAAQ LVRRAERAGF KAIALTVDTP ILGRREADIK NRFTLPSHLV LKNFEGLDLR KLDKTSDSNV
201: ASYVAGPFDQ SFNWKDIQWL QTITSLPILL KGVLTAEDTR IAVQAGVAGI IVSNHGARQL DYVPATIMAL EEVVKAAQGR IPVFLDGGIR RGTDVFKALA
301: LGAAGVFIGR PVLFSLAADG EAGVRKVLQM LRDEFELTMA LSGCRSLKEI TRDHVVTEWD RPRFAPKL

Best Arabidopsis Sequence Match ( AT3G14420.1 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.