Factsheet for PGSC0003DMT400019434

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g048250.2.1	Tomato	nucleus	97.28	94.46
KRH42555	Soybean	endoplasmic reticulum	85.05	84.59
PGSC0003DMT400071115	Potato	cytosol	84.24	83.56
KRH42560	Soybean	peroxisome	82.61	83.06
PGSC0003DMT400054730	Potato	peroxisome	83.42	82.75
KRH42553	Soybean	endoplasmic reticulum	82.34	82.34
KRH58663	Soybean	peroxisome	82.07	82.07
KRH58657	Soybean	peroxisome, plastid	65.49	80.87
KRH42559	Soybean	cytosol	6.79	80.65
KRH42558	Soybean	peroxisome	43.48	78.05
KRH42554	Soybean	peroxisome	63.59	77.23
PGSC0003DMT400058959	Potato	peroxisome	59.78	60.44
PGSC0003DMT400058960	Potato	peroxisome	57.34	57.97
PGSC0003DMT400058920	Potato	peroxisome	55.71	56.47
PGSC0003DMT400058950	Potato	peroxisome	52.45	51.19

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	ProteinID:ABB02645	ProteinID:ABB02645.1	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN
EMBL:DQ222514	InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491
GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396	UniProt:M1AC27	PFAM:PF01070	EnsemblPlantsGene:PGSC0003DMG400007514
PGSC:PGSC0003DMG400007514	EnsemblPlants:PGSC0003DMT400019434	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578
PANTHER:PTHR10578:SF103	SMART:SM01240	SUPFAM:SSF51395	UniParc:UPI0002964DB8	:	:

Description

Glycolate oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400007514]

Coordinates

chr8:+:14433544..14440824

Molecular Weight (calculated)

40451.1 Da

IEP (calculated)

9.402

GRAVY (calculated)

-0.020

Length

368 amino acids

Sequence
(BLAST)

001: MESVTNVMEY EILAKERLPK MIYDYYASGA EDQWTLQENR NAFSRILFRP RILVDVSNID TTTSVLGFKI SMPIMVAPTA MQKMAHPEGE YATARATSAA
101: GTIMTLSSWG TSSVEEVAST GPGIRFFQLY VYKDRNVVMQ LVKRAERAGF KAIALTVDTP RLGRREADIK NRFVLPPNLS LKNFEGLDLG KIDKTDDSGL
201: ASYVAGQVDR SLSWKDVKWL KTITHLPILL KGVLTAEDAR LAVESGAAGI IVSNHGARQL DYAPATVMAL EEVVKAVQGR LPVFLDGGIR RGTDVFKALA
301: LGASGVFIGR PVVFSLAVDG EAGVRKVLQM LHDEFELTMA LSGCRSIKEI SRSHITTPWD SPRVTPRL

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.