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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 2
  • peroxisome 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, peroxisome
BaCelLo:cytosol
EpiLoc:peroxisome
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:mitochondrion
PTS1:peroxisome
WoLF PSORT:cytosol
YLoc:peroxisome
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400019434 Potato peroxisome 94.46 97.28
Solyc07g056540.2.1 Tomato plastid 81.0 82.75
Solyc10g007600.2.1 Tomato plastid 79.68 81.4
Solyc03g122170.2.1 Tomato peroxisome 55.67 61.52
Solyc03g122130.2.1 Tomato peroxisome 52.24 57.73
Solyc03g122140.2.1 Tomato peroxisome 53.83 56.2
Solyc03g122160.1.1 Tomato cytosol, nucleus, peroxisome 14.25 51.92
Solyc03g122150.2.1 Tomato peroxisome 18.73 46.41
Protein Annotations
MapMan:1.3.2Gene3D:3.20.20.70InterPro:Aldolase_TIMInterPro:Alpha-hydoxy_acid_DH_FMNInterPro:FMN-dep_DHInterPro:FMN_HAD
InterPro:FMN_hydac_DH_ASGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0008150
GO:GO:0008152GO:GO:0010181GO:GO:0016491GO:GO:0055114InterPro:IPR013785InterPro:IPR037396
UniProt:K4CKH7PFAM:PF01070PIRSF:PIRSF000138ScanProsite:PS00557PFscan:PS51349PANTHER:PTHR10578
PANTHER:PTHR10578:SF103SUPFAM:SSF51395EnsemblPlantsGene:Solyc08g048250.2EnsemblPlants:Solyc08g048250.2.1UniParc:UPI000276C679:
Description
No Description!
Coordinates
chr8:+:14486301..14493347
Molecular Weight (calculated)
41649.6 Da
IEP (calculated)
8.706
GRAVY (calculated)
0.032
Length
379 amino acids
Sequence
(BLAST)
001: MESVTNVMEY EILAKKRLPK MIYDYYASGA EDQWTLQENR NAFSKILFRP RILVDVSNID TTTSVLGYKI SMPIMVAPTA MQKMAHPEGE CATARATSAA
101: GTIMTLSSWG TSSVEEVAST GPGIRFFQLY VSLSVHCSYY YVYKDRNVVM QLVKRAERAG FKAIALTVDT PRLGRREADI KNRFVLPPNL SLKNFEGLDL
201: GKIDKTDDSG LASYVAGQVD QSLSWKDVKW LQTITHLPIL LKGVLTAEDA RLAVESGAAG IIVSNHGARQ LDYAPATVMA LEEVVKAVQG RLPVFLDGGI
301: RRGTDVFKAL ALGASGVFIG RPVVFSLAVD GEAGVRKVLQ MLHDEFELTM ALSGCLSIKE ISRSHITTPW DPLRITPRL
Best Arabidopsis Sequence Match ( AT4G18360.1 )
(BLAST)
001: MEITNVMEYE KIAKEKLPKM VYDYYASGAE DQWTLQENRN AFSRILFRPR ILIDVSKIDV STTVLGFNIS MPIMIAPTAM QKMAHPDGEL ATARATSAAG
101: TIMTLSSWAT CSVEEVASTG PGIRFFQLYV YKDRNVVIQL VKRAEEAGFK AIALTVDTPR LGRRESDIKN RFALPRGLTL KNFEGLDLGK IDKTNDSGLA
201: SYVAGQVDQS LSWKDIKWLQ SITSLPILVK GVITAEDARI AVEYGAAGII VSNHGARQLD YVPATIVALE EVVKAVEGRI PVFLDGGVRR GTDVFKALAL
301: GASGVFVGRP SLFSLAADGE AGVRKMLQML RDEFELTMAL SGCRSLREIS RTHIKTDWDT PHYLSAKL
Arabidopsis Description
GLO5Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 [Source:UniProtKB/Swiss-Prot;Acc:O49506]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.