Factsheet for Solyc10g007600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
peroxisome 6

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054730	Potato	peroxisome	97.84	97.84
Solyc07g056540.2.1	Tomato	plastid	85.44	85.44
AT4G18360.4	Thale cress	peroxisome	83.83	84.51
Bra012602.1-P	Field mustard	peroxisome	83.29	83.97
CDY55631	Canola	peroxisome	83.29	83.97
CDY01535	Canola	peroxisome	82.75	83.42
CDX78843	Canola	peroxisome	79.51	80.16
Bra013299.1-P	Field mustard	peroxisome	78.98	80.05
Solyc08g048250.2.1	Tomato	nucleus	81.4	79.68
CDX99474	Canola	peroxisome	78.98	79.62
Solyc03g122170.2.1	Tomato	peroxisome	58.76	63.56
Solyc03g122130.2.1	Tomato	peroxisome	53.91	58.31
Solyc03g122140.2.1	Tomato	peroxisome	55.53	56.75
Solyc03g122160.1.1	Tomato	cytosol, nucleus, peroxisome	14.29	50.96
Solyc03g122150.2.1	Tomato	peroxisome	19.14	46.41

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH	InterPro:FMN_HAD
InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607
GO:GO:0009987	GO:GO:0010181	GO:GO:0010204	GO:GO:0016491	GO:GO:0042742	GO:GO:0050665
GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396	UniProt:K4CXT9	PFAM:PF01070	PIRSF:PIRSF000138
ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF103	SUPFAM:SSF51395	EnsemblPlantsGene:Solyc10g007600.2
EnsemblPlants:Solyc10g007600.2.1	UniParc:UPI000276B3BF	SEG:seg	:	:	:

Description

Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 [Source:Projected from Arabidopsis thaliana (AT4G18360) UniProtKB/Swiss-Prot;Acc:O49506]

Coordinates

chr10:-:1896939..1901455

Molecular Weight (calculated)

40686.3 Da

IEP (calculated)

9.436

GRAVY (calculated)

-0.019

Length

371 amino acids

Sequence
(BLAST)

001: MGEVTNVMEF EAIAKQKLPK MVYDYYASGA EDQWTLAENR NAFSRILFRP RILIDVSKID LSTSVLGFNI SMPIMIAPTA MQKMAHPDGE YAIARAASAA
101: ETIMTLSSWG TSSVEEVNST GPGTRFFQLY VYKDRNVTIQ LVRRAERAGF KAIALTVDTP RLGRREADIK NRFNLPPHLS LKNFEGLDIG KLNKAEDSGL
201: ASYVAGQVDR SLSWKDVQWL QSITSLPILV KGVLTAEDAK IAVQSGAAGI IVSNHGARQL DYVPATIMAL EEVVKAVQGR IPVFLDGGVR RGTDVFKALA
301: LGASGVFIGR PIIWSLAADG EAGVKKALQM IRDEFELTMA LSGCRSLKEI TRNHVMTDWE TPRASLPVPR L

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.