Factsheet for PGSC0003DMT400054730

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g007600.2.1	Tomato	plastid	97.84	97.84
Bra012602.1-P	Field mustard	peroxisome	84.64	85.33
CDY55631	Canola	peroxisome	84.64	85.33
AT4G18360.4	Thale cress	peroxisome	84.64	85.33
PGSC0003DMT400071115	Potato	cytosol	85.18	85.18
CDY01535	Canola	peroxisome	84.1	84.78
KRH42555	Soybean	endoplasmic reticulum	83.29	83.51
PGSC0003DMT400019434	Potato	peroxisome	82.75	83.42
KRH42553	Soybean	endoplasmic reticulum	82.21	82.88
KRH42560	Soybean	peroxisome	81.4	82.51
KRH58663	Soybean	peroxisome	80.86	81.52
CDX78843	Canola	peroxisome	80.05	80.71
Bra013299.1-P	Field mustard	peroxisome	79.51	80.6
CDX99474	Canola	peroxisome	79.51	80.16
KRH58657	Soybean	peroxisome, plastid	64.15	79.87
KRH42558	Soybean	peroxisome	43.4	78.54
KRH42559	Soybean	cytosol	6.47	77.42
KRH42554	Soybean	peroxisome	60.65	74.26
PGSC0003DMT400058959	Potato	peroxisome	59.84	60.99
PGSC0003DMT400058960	Potato	peroxisome	56.33	57.42
PGSC0003DMT400058920	Potato	peroxisome	54.99	56.2
PGSC0003DMT400058950	Potato	peroxisome	52.29	51.46

Protein Annotations

MapMan:1.3.2	EntrezGene:102604120	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH
InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006950
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605
GO:GO:0009607	GO:GO:0009987	GO:GO:0010181	GO:GO:0010204	GO:GO:0016491	GO:GO:0042742
GO:GO:0050665	GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396	UniProt:M1BWS8	PFAM:PF01070
EnsemblPlantsGene:PGSC0003DMG400021248	PGSC:PGSC0003DMG400021248	EnsemblPlants:PGSC0003DMT400054730	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349
PANTHER:PTHR10578	PANTHER:PTHR10578:SF103	SUPFAM:SSF51395	UniParc:UPI0002956616	RefSeq:XP_006360019.1	RefSeq:XP_015170141.1
SEG:seg	:	:	:	:	:

Description

Glycolate oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400021248]

Coordinates

chr10:-:2622696..2627683

Molecular Weight (calculated)

40589.3 Da

IEP (calculated)

9.614

GRAVY (calculated)

0.009

Length

371 amino acids

Sequence
(BLAST)

001: MGEITNVMEF EAIAKQKLPK MVYDYYASGA EDQWTLAENR NAFSRILFRP RILIDVSKID LSTTVLGFNI SMPIMVAPTA MQKMAHPDGE YAIARAASAA
101: GTIMTLSSWG TSSVEEVAST GPGTRFFQLY VYKDRNVTIQ LVRRAERAGF KAIALTVDTP RLGRREADIK NRFNLPPHLS LKNFEGLDIG KLNKAEDSGL
201: ASYVAGQVDR SLSWKDVQWL QTITSLPILV KGVITAEDAK IAVQSGAAGI IVSNHGARQL DYVPATIMAL EEVVKAVQGR IPVFLDGGVR RGTDVFKALA
301: LGASGVFIGR PIIWSLAADG EAGVKKALQM IRDEFELTMA LSGCRSLKEI TRNHVMTDWE TPRASLPVSR L

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.