Factsheet for Solyc07g056540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc10g005650.2.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT3G14420.1	Solyc11g073060.1.1	AT3G46090.1	17259181
AT3G14420.1	Solyc10g005650.2.1	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071115	Potato	cytosol	97.84	97.84
CDY39115	Canola	peroxisome	91.64	92.64
Bra021556.1-P	Field mustard	peroxisome	91.64	92.64
Bra021555.1-P	Field mustard	peroxisome	86.52	92.51
CDY33220	Canola	peroxisome	88.95	92.44
CDX75771	Canola	peroxisome	91.37	92.37
CDX82484	Canola	peroxisome	91.37	92.37
CDX98453	Canola	peroxisome	91.91	92.16
CDX97574	Canola	peroxisome	91.91	92.16
CDY25425	Canola	peroxisome	88.41	91.88
CDX68646	Canola	peroxisome	88.41	91.88
CDX81437	Canola	peroxisome	88.41	91.88
AT3G14420.1	Thale cress	peroxisome	90.84	91.83
CDY39114	Canola	peroxisome	90.84	91.83
CDY33221	Canola	peroxisome	90.84	91.83
Bra001550.1-P	Field mustard	peroxisome	90.84	91.83
Bra027338.1-P	Field mustard	peroxisome	91.37	91.62
CDX82483	Canola	peroxisome	91.11	90.62
Bra001551.1-P	Field mustard	peroxisome	86.79	89.94
VIT_10s0003g03830.t01	Wine grape	peroxisome	90.03	89.78
AT3G14415.2	Thale cress	peroxisome	90.03	89.54
KRH43857	Soybean	peroxisome	89.22	89.22
EER93339	Sorghum	peroxisome	87.6	88.32
TraesCS2A01G250800.1	Wheat	peroxisome	87.6	88.32
TraesCS2D01G251800.2	Wheat	peroxisome, plastid	87.6	88.32
KRH13608	Soybean	nucleus	88.14	88.14
Os07t0152900-01	Rice	peroxisome	87.33	87.8
KXG34415	Sorghum	peroxisome	87.33	87.8
TraesCS5D01G432900.1	Wheat	peroxisome	86.79	87.03
TraesCS5B01G426500.1	Wheat	golgi	86.79	87.03
TraesCS5A01G424400.1	Wheat	peroxisome	86.79	87.03
Os03t0786100-01	Rice	peroxisome	86.25	86.72
TraesCS2B01G264100.2	Wheat	peroxisome, plastid	87.6	86.44
HORVU0Hr1G013900.4	Barley	peroxisome	76.01	86.24
CDY40891	Canola	peroxisome	72.24	86.17
CDX81438	Canola	peroxisome	72.24	86.17
CDY16268	Canola	peroxisome	72.24	86.17
CDY11082	Canola	peroxisome	72.24	86.17
CDY40892	Canola	peroxisome	40.16	86.13
Solyc10g007600.2.1	Tomato	plastid	85.44	85.44
CDY25424	Canola	peroxisome	74.39	82.39
CDX97573	Canola	peroxisome	84.37	82.15
CDX98451	Canola	peroxisome	67.66	82.03
Bra005793.1-P	Field mustard	peroxisome	25.61	81.2
Solyc08g048250.2.1	Tomato	nucleus	82.75	81.0
CDX68645	Canola	peroxisome	73.32	80.71
CDY35618	Canola	peroxisome	73.32	80.71
GSMUA_Achr4P22900_001	Banana	peroxisome	32.61	78.57
HORVU2Hr1G060010.5	Barley	peroxisome	78.71	78.28
Zm00001d018810_P002	Maize	peroxisome, plastid	85.98	76.32
Os08t0198700-01	Rice	vacuole	14.29	75.71
CDX75772	Canola	mitochondrion	51.48	66.32
Bra027339.1-P	Field mustard	peroxisome	83.56	66.1
Solyc03g122170.2.1	Tomato	peroxisome	59.3	64.14
HORVU2Hr1G060070.1	Barley	peroxisome	25.61	60.51
Solyc03g122130.2.1	Tomato	peroxisome	54.18	58.6
Solyc03g122140.2.1	Tomato	peroxisome	54.72	55.92
Solyc03g122160.1.1	Tomato	cytosol, nucleus, peroxisome	14.29	50.96
Solyc03g122150.2.1	Tomato	peroxisome	19.68	47.71
Os04t0623600-01	Rice	extracellular	11.32	42.86

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH	InterPro:FMN_HAD
InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003973	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0052852	GO:GO:0052853
GO:GO:0052854	GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396	UniProt:K4CGI6	PFAM:PF01070
PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80	SUPFAM:SSF51395
EnsemblPlantsGene:Solyc07g056540.2	EnsemblPlants:Solyc07g056540.2.1	UniParc:UPI000276B262	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:+:64331787..64335377

Molecular Weight (calculated)

40609.3 Da

IEP (calculated)

9.395

GRAVY (calculated)

0.008

Length

371 amino acids

Sequence
(BLAST)

001: MEEVTNVTEY QEIAKKKLPK MVYDYYASGA EDQWTLAENR NAFSRILFRP RILIDVSKID MTTTVLGFKI SMPIMIAPTA MQKMAHPEGE YATARAASAA
101: GTIMTLSSWA TSSVEEVAST GPGIRFFQLY VYKDRNVVAQ LVRRAEKAGF KAIALTVDTP RLGRREADIK NRFVLPPFLT LKNFEGLDLG KMDQANDSGL
201: ASYVAGQIDR TLSWKDVQWL QTITSMPILV KGVITAEDAR LAVQAGAAGI IVSNHGARQL DYVPATISAL EEVVKGAQGR IPVFLDGGVR RGTDVFKALA
301: LGASGIFIGR PVVFSLAAEG EAGVKKVLQM LRDEFELTMA LSGCRSLKEI TRNHIVTEWD TPHAALPAPR L

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.