Factsheet for Solyc10g005650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g099100.2.1
Solyc02g094120.2.1
Solyc05g024240.2.1
Solyc07g005690.2.1
Solyc12g009970.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56290.1	Solyc02g094120.2.1	AT3G01910.1	21798944
AT5G56290.1	Solyc01g099100.2.1	AT5G27600.1	16256065
AT5G56290.1	Solyc05g024240.2.1	AT5G43280.1	24879895
AT5G56290.1	Solyc07g005690.2.1	AT5G57910.1	21798944
AT5G56290.1	Solyc12g009970.1.1	AT5G57910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029209	Potato	cytosol, plastid	98.25	98.25
VIT_19s0015g01940.t01	Wine grape	plastid	74.73	75.54
KRH62568	Soybean	plastid	70.56	71.14
KRH56371	Soybean	plastid	70.16	70.92
AT5G56290.1	Thale cress	plastid	68.15	69.64
Bra028938.1-P	Field mustard	plastid	68.15	69.45
GSMUA_Achr7P20310_001	Banana	plastid	69.62	68.34
Bra002826.1-P	Field mustard	plastid	65.46	63.91
EES15431	Sorghum	plastid	62.9	63.76
Os08t0500100-02	Rice	cytosol	62.5	63.18
Zm00001d031327_P009	Maize	plastid	62.63	62.97
HORVU7Hr1G049220.10	Barley	plastid	62.77	62.43
TraesCS7A01G241500.5	Wheat	cytosol, plastid	61.96	61.63
TraesCS7B01G137000.2	Wheat	cytosol, plastid	61.69	61.36
TraesCS7D01G240500.3	Wheat	cytosol, plastid	61.69	61.28
CDY69423	Canola	plastid	34.95	59.91
Zm00001d052851_P002	Maize	plastid	60.89	58.91
TraesCS6A01G105000.1	Wheat	plastid	52.69	55.29
Bra035613.1-P	Field mustard	extracellular, mitochondrion	5.51	34.75

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.4.1.1.1	GO:GO:0003674	GO:GO:0005052	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005778
GO:GO:0005829	GO:GO:0006625	GO:GO:0006810	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016560	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:K4CX97	PFAM:PF00515	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR10130	PANTHER:PTHR10130:SF0	InterPro:PTS1R_family	SMART:SM00028	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc10g005650.2
EnsemblPlants:Solyc10g005650.2.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI000276C968
SEG:seg	:	:	:	:	:

Description

Peroxisome biogenesis protein 5 [Source:Projected from Arabidopsis thaliana (AT5G56290) UniProtKB/Swiss-Prot;Acc:Q9FMA3]

Coordinates

chr10:-:519710..532795

Molecular Weight (calculated)

82779.2 Da

IEP (calculated)

4.644

GRAVY (calculated)

-0.547

Length

744 amino acids

Sequence
(BLAST)

001: MAMRDLVTGA PSCGEPSSSS NPLGALANAL IGSSSKTQER LKEIPTSVST SSNGNFLAGV EEPFVSLPGS EFEHPLQPNI QGSQFLQGYR SADQNKLADA
101: WDEIQRPQLP FPHGSQNMTN IPLEHARLQP DLNGPPQQVL SSFLHSFVNS GHGGVPFRPA SLPLLGLSEG DKQCIRDRST IMARHFFADK TEDFINGQVN
201: ALLSSLEIDN HVRARGPLPG RYPELEEYWN ESLAMKPVPH VADGWINEFA QNRVGHADPN AWAQSFEQQH GANGWASEFE HEQSQLGMIG QMRGANIPNL
301: AAMEQTRMLA HTLAQNSDPK FQNSKFLQFV SKMSRGEISI EENQFKPATV SSGDWAAEYE QKHNGGQSWA DQFAHEELSR GPQGWVNEFS AERAQHGSVN
401: DEWVSEFSKL NVNDDWADEF GRQVAEGAFG ETSADGWAEA YDEYMNEQAA LKQQSDASRG VYVFSDMNPY VGHPNPLKEG QELFRKGLLS EAVLALEAEV
501: LKNPENAEGW RLLGIAHAEN DDDQQAIAAM MRAQEADPAN LEVLLSLGVS HTNELEQQAA LKYLYSWLRH HPKYGSIAPQ EQPISFYHAD VARLFTDAAQ
601: MAPEDADVHI VLGVLYNLSR EYDRAIESFK TALELKPRDY SLWNKLGATQ ANSVQSSDAI LAYQQALDIK PNYVRAWANM GISYANQGMY EDSIRYYVRA
701: LAMNPKADNA WQYLRISLSC ASRNDMLEAC DSRNLDVLQK EFPL

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.