Factsheet for Solyc05g024240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
peroxisome 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g091470.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43280.1	Solyc09g091470.2.1	AT2G33150.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G43280.1	Thale cress	peroxisome	66.81	55.76
VIT_01s0146g00270.t01	Wine grape	peroxisome	65.95	55.64
Bra027479.1-P	Field mustard	peroxisome	62.93	52.9
CDY32958	Canola	peroxisome	62.93	52.9
CDY43605	Canola	peroxisome	62.5	52.54
KRH66641	Soybean	peroxisome	59.91	50.92
GSMUA_Achr7P22470_001	Banana	peroxisome	50.0	40.14
TraesCS3D01G430400.2	Wheat	peroxisome	49.57	39.66
TraesCS3D01G430300.1	Wheat	peroxisome	49.57	39.66
TraesCS3B01G472000.1	Wheat	peroxisome	49.57	39.66
TraesCS3A01G438000.1	Wheat	peroxisome	49.57	39.66
TraesCS3A01G438100.1	Wheat	peroxisome	48.71	38.97
Zm00001d011971_P001	Maize	mitochondrion, peroxisome	47.84	38.54
Os01t0925200-01	Rice	nucleus, plasma membrane	48.28	38.49
KXG34022	Sorghum	peroxisome	47.41	37.41
Solyc01g059830.2.1	Tomato	nucleus, plastid	28.45	24.91
Solyc08g078130.2.1	Tomato	mitochondrion	25.43	18.97
Solyc05g005180.2.1	Tomato	nucleus	23.71	16.32
Solyc06g009160.2.1	Tomato	cytosol	23.71	7.51
Solyc01g066620.2.1	Tomato	plastid	21.98	7.15
Solyc12g099440.1.1	Tomato	nucleus	22.41	7.15
Solyc07g019670.2.1	Tomato	plastid	20.69	6.64
Solyc12g007170.1.1	Tomato	plastid	20.69	6.63
Solyc08g068390.2.1	Tomato	peroxisome	20.26	6.62
Solyc07g063010.2.1	Tomato	nucleus	0.86	0.68

Protein Annotations

EnsemblPlants:Solyc05g024240.2.1	EnsemblPlantsGene:Solyc05g024240.2	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hyd/isom_CS	InterPro:Enoyl-CoA_hydra/iso	PANTHER:PTHR43149	PANTHER:PTHR43149:SF1
PFAM:PF00378	ScanProsite:PS00166	SUPFAM:SSF52096	UniParc:UPI0002765AD3	UniProt:K4BZR2	MapMan:5.7.3.5.2

Description

Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal [Source:Projected from Arabidopsis thaliana (AT5G43280) UniProtKB/Swiss-Prot;Acc:Q9FHR8]

Coordinates

chr5:+:30892563..30895002

Molecular Weight (calculated)

25458.8 Da

IEP (calculated)

7.073

GRAVY (calculated)

0.067

Length

232 amino acids

Sequence
(BLAST)

001: MEEYKSLKII QKSPNSLVYY LYLNRPTHLN ALSQDFFTEF PKAISSLDQN PDVAVIILAG SGKHFCSGID LHTLGDVFKE TDAVDCGRKV ERLRRHIKFL
101: QEAITALECC RKPVIAAVHG ACIGGAIDII TACDIRYCST DAFFSVKEVD LAITADLGTL QRLPSIVGFG NAMELALTGR RFTGSEAKDL GLVSKLFTSK
201: EALEEGVKVV AKGILSWPIH YMQQSKATVN ES

Best Arabidopsis Sequence Match ( AT5G43280.1 )
(BLAST)

001: MTMESYKTLE IIRKNTDSSV FHLIINRPSH LNALSLDFFI EFPKALSSLD QNPDVSVIIL SGAGKHFCSG IDLNSLSSIS TQSSSGNDRG RSSEQLRRKI
101: KSMQAAITAI EQCRKPVIAA IHGACIGGGV DLITACDIRY CSEDAFFSIK EVDLAIVADL GTLQRLPSIV GYANAMELAL TARRFSGSEA KDLGLVSKVF
201: GSKSELDNGV TTIAEGIGGK SPLAVTGTKA VLLRSREVSV EQGLDYVATW NSAMLISDDL NEAVSAQMMK RKPRFAKL

Arabidopsis Description

DCI1Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9FHR8]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.