Factsheet for Solyc07g019670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
peroxisome 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g007170.1.1	Tomato	plastid	83.54	83.43
VIT_11s0016g03690.t01	Wine grape	peroxisome	77.45	77.35
KRH48371	Soybean	nucleus	76.9	76.8
KRH39301	Soybean	endoplasmic reticulum, mitochondrion, nucleus	76.63	76.52
Bra011076.1-P	Field mustard	peroxisome	74.55	74.65
CDY35240	Canola	peroxisome	74.55	74.65
CDY06852	Canola	peroxisome	74.27	74.38
CDX97462	Canola	peroxisome	74.0	74.2
AT4G29010.1	Thale cress	peroxisome	73.86	74.06
CDY66477	Canola	peroxisome	73.86	74.06
GSMUA_Achr7P14420_001	Banana	peroxisome	72.34	72.14
Bra010347.1-P	Field mustard	peroxisome	73.17	72.07
CDY69211	Canola	mitochondrion, peroxisome	60.17	71.31
EES04919	Sorghum	peroxisome	69.16	68.78
Os02t0274100-01	Rice	plasma membrane	68.6	68.32
TraesCS6B01G153900.1	Wheat	peroxisome	68.46	68.18
TraesCS6D01G116200.1	Wheat	golgi, peroxisome	68.19	67.91
TraesCS6A01G125800.1	Wheat	golgi	68.05	67.77
HORVU3Hr1G013880.1	Barley	peroxisome	67.77	67.31
TraesCS3D01G077200.1	Wheat	peroxisome	67.91	67.26
HORVU6Hr1G024100.1	Barley	peroxisome	67.36	67.08
Bra024170.1-P	Field mustard	peroxisome	68.33	67.03
GSMUA_Achr8P19760_001	Banana	peroxisome	67.36	66.62
TraesCS3A01G077000.3	Wheat	peroxisome	68.19	66.26
TraesCS3B01G091200.1	Wheat	endoplasmic reticulum, vacuole	63.21	65.95
Zm00001d053308_P009	Maize	peroxisome	67.5	63.46
CDX92908	Canola	peroxisome	68.74	63.15
Solyc08g068390.2.1	Tomato	peroxisome	60.72	61.83
Solyc12g099440.1.1	Tomato	nucleus	58.23	57.91
Solyc01g066620.2.1	Tomato	plastid	50.9	51.61
Solyc06g009160.2.1	Tomato	cytosol	45.5	44.95
Zm00001d015992_P001	Maize	peroxisome	67.91	40.85
Solyc07g063010.2.1	Tomato	nucleus	11.48	28.04
Solyc01g059830.2.1	Tomato	nucleus, plastid	9.27	25.28
Solyc08g078130.2.1	Tomato	mitochondrion	9.68	22.51
Solyc05g024240.2.1	Tomato	nucleus	6.64	20.69
Solyc05g005180.2.1	Tomato	nucleus	9.54	20.47

Protein Annotations

KEGG:00062+4.2.1.17+1.1.1.35	KEGG:00071+4.2.1.17+1.1.1.35	KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35	KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8	KEGG:00120+1.1.1.35	KEGG:00280+4.2.1.17+1.1.1.35
KEGG:00281+4.2.1.17+1.1.1.35	KEGG:00310+4.2.1.17+1.1.1.35	KEGG:00360+4.2.1.17	KEGG:00362+4.2.1.17+1.1.1.35	KEGG:00380+4.2.1.17+1.1.1.35	KEGG:00410+4.2.1.17
KEGG:00592+4.2.1.17	KEGG:00623+1.1.1.35	KEGG:00627+4.2.1.17	KEGG:00640+4.2.1.17	KEGG:00650+4.2.1.17+1.1.1.35	KEGG:00650+5.1.2.3+4.2.1.17+1.1.1.35
KEGG:00720+4.2.1.17+1.1.1.35	KEGG:00903+4.2.1.17	KEGG:00930+4.2.1.17+1.1.1.35	Gene3D:1.10.1040.50	InterPro:3-OHacyl-CoA_DH_CS	InterPro:3-OHacyl-CoA_DH_NAD-bd
Gene3D:3.40.50.720	Gene3D:3.90.226.10	InterPro:3HC_DH_C	MapMan:5.7.3.2.2	InterPro:6-PGluconate_DH-like_C_sf	InterPro:AIM1
InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hyd/isom_CS	InterPro:Enoyl-CoA_hydra/iso	GO:GO:0003674	GO:GO:0003824	GO:GO:0003857
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006629
GO:GO:0006631	GO:GO:0006635	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016491	GO:GO:0055114	UniProt:K4CCS9	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00378	PFAM:PF00725
PFAM:PF02737	ScanProsite:PS00067	ScanProsite:PS00166	PANTHER:PTHR23309	PANTHER:PTHR23309:SF10	SUPFAM:SSF48179
SUPFAM:SSF51735	SUPFAM:SSF52096	EnsemblPlantsGene:Solyc07g019670.2	EnsemblPlants:Solyc07g019670.2.1	TMHMM:TMhelix	UniParc:UPI000276C5BC
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:12707106..12716182

Molecular Weight (calculated)

78402.5 Da

IEP (calculated)

9.873

GRAVY (calculated)

0.092

Length

723 amino acids

Sequence
(BLAST)

001: MATLKVTMEV GIDGVAVITI FNPPVNALAI PIIAGLKEKW TEATMRNDVK AIVLTGNGGR FSGGFDINVF QKVHATGDTS QMPDVSVNLV VNMMEDGKKP
101: AVAAIEGLAL GGGLELALGC HARIAAPRAQ LGLPELSLGV MPGFGGTQRL PRLIGLSKAV ELMMTSKPIM SEEGKMLGLI DAIVPSAELL KVSRRWALDI
201: AERRKPWMRS LHKTDKIGSL SEAHEILKVA REQVKQTVKN MPQHMACIEV IEEGIIHGGY NGVLKEAKVF KDLLMSDTSK GLVHIFFSQR ATSKVPNVTD
301: IGLKPRTVKK VAVIGGGLMG SGIATALALS NTIVILKEIN SEFLQKGMKA IEANVSGLVA RKNLPQDKAD KALSMVKGAL DYSDFKDVDM VIEAVIENVP
401: LKQKIFSEIE KVCPPHCILA TNTSTIDLNI IGENTTSKDR IIGAHFFSPA HIMPLLEIVR TEKTSAQAIL DLMAVGRAIK KVPVVVGNCT GFAVNRTFFP
501: YSQGAHILVN LGVNVFRIDT QIASFGLPMG PFQLQDLTGY GVAVAVGKEF RSAFSDRTFK SPLIDLLIKS GRNGKNNGKG YYIYEKGRKP RPDFTVLPII
601: EESRRLANIM PGGKPISITD QEIVEMILFP VVNEACRVLD EGIVVRASDL DVTSVLGMSF PSYRGGIVFW ADTVGAGHIY RSLKKWSELY GNFFKPSRFL
701: EERATKGIPL SAPSTSSVSR SRM

Best Arabidopsis Sequence Match ( AT4G29010.1 )
(BLAST)

001: MAKKIGVTME VGNDGVAVIT ISNPPVNSLA SPIISGLKEK FRDANQRNDV KAIVLIGNNG RFSGGFDINV FQQVHKTGDL SLMPEVSVEL VCNLMEDSRK
101: PVVAAVEGLA LGGGLELAMA CHARVAAPKA QLGLPELTLG VIPGFGGTQR LPRLVGLAKA TDMILLSKSI SSEEGHKLGL IDALVPPGDV LSTSRKWALD
201: IAEGRKPFLQ SLHRTDKIGS LSEARAILKN SRQLAKKIAP NMPQHHACIE VIEEGIIHGG YSGVLKEAEV FKQLVLSDTA KGLVHVFFAQ RATSKVPNVT
301: DVGLKPRPIK KVAVIGGGLM GSGIATALLL SNIRVVLKEI NSEFLMKGIK SVEANMKSLV SRGKLTQDKA GKALSLFKGV LDYTEFNDVD MVIEAVIENI
401: QLKQNIFKEI EKVCSPHCIL ASNTSTIDLD VIGEKTNSKD RIVGAHFFSP AHLMPLLEIV RSKNTSAQVI LDLMAVGKAI KKVPVVVGNC IGFAVNRTFF
501: PYSQAAHMLA NLGVDLFRID SVITSFGLPL GPFQLGDLAG HGIGLAVGPI YAKVYGDRMF RSPMTELLLK SGRNGKINGR GYYIYEKGSK PKPDPSVLSI
601: VEKSRKLTNI MPGGKPISVT DKEIVEMILF PVVNEACRVL DEGVVIRASD LDIASVLGMS FPSYRGGIVF WADTVGPKYI YERLKKLSET YGSFFKPSRY
701: LEERAMNGML LSESKSSRSK L

Arabidopsis Description

AIM1Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPI6]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.