Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • peroxisome 5
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, peroxisome, secretory
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:peroxisome
PTS1:peroxisome
WoLF PSORT:cytosol
YLoc:peroxisome
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400032309 Potato peroxisome 97.3 97.3
CDX98542 Canola peroxisome 75.68 77.24
VIT_19s0014g02370.t01 Wine grape peroxisome 76.35 76.35
AT3G15290.1 Thale cress cytosol, mitochondrion, peroxisome 75.68 76.19
Bra027263.1-P Field mustard peroxisome 75.0 75.51
KRH55235 Soybean peroxisome 62.16 73.9
GSMUA_Achr9P20010_001 Banana peroxisome 71.62 71.14
CDX97647 Canola peroxisome 75.0 70.48
EES01597 Sorghum peroxisome, plasma membrane 70.61 69.9
KRH55427 Soybean nucleus 74.32 68.97
TraesCS3D01G321200.1 Wheat peroxisome 70.27 68.42
Zm00001d012590_P001 Maize extracellular 68.92 68.23
TraesCS3A01G327700.1 Wheat peroxisome 69.93 68.09
Os01t0796400-01 Rice nucleus 68.92 67.55
TraesCS3B01G357200.1 Wheat peroxisome 71.28 63.55
Solyc08g068390.2.1 Tomato peroxisome 29.05 12.11
Solyc07g019670.2.1 Tomato plastid 28.04 11.48
Solyc01g066620.2.1 Tomato plastid 27.03 11.22
Solyc12g007170.1.1 Tomato plastid 27.36 11.19
Solyc12g099440.1.1 Tomato nucleus 25.34 10.32
Solyc06g009160.2.1 Tomato cytosol 20.95 8.47
Solyc08g078130.2.1 Tomato mitochondrion 5.41 5.14
HORVU5Hr1G076170.6 Barley plastid 4.39 4.38
Solyc05g005180.2.1 Tomato nucleus 4.05 3.56
HORVU6Hr1G021980.6 Barley cytosol 3.04 3.2
Solyc01g059830.2.1 Tomato nucleus, plastid 2.7 3.02
Solyc05g024240.2.1 Tomato nucleus 0.68 0.86
Protein Annotations
KEGG:00062+4.2.1.17+1.1.1.35KEGG:00071+4.2.1.17+1.1.1.35KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00120+1.1.1.35KEGG:00280+4.2.1.17+1.1.1.35KEGG:00281+4.2.1.17+1.1.1.35
KEGG:00310+4.2.1.17+1.1.1.35KEGG:00360+4.2.1.17KEGG:00362+4.2.1.17+1.1.1.35KEGG:00380+4.2.1.17+1.1.1.35KEGG:00410+4.2.1.17KEGG:00592+4.2.1.17
KEGG:00623+1.1.1.35KEGG:00627+4.2.1.17KEGG:00640+4.2.1.17KEGG:00650+4.2.1.17+1.1.1.35KEGG:00650+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00720+4.2.1.17+1.1.1.35
KEGG:00903+4.2.1.17KEGG:00930+4.2.1.17+1.1.1.35Gene3D:1.10.1040.10InterPro:3-OHacyl-CoA_DHInterPro:3-OHacyl-CoA_DH_CSInterPro:3-OHacyl-CoA_DH_NAD-bd
Gene3D:3.40.50.720MapMan:35.1InterPro:3HC_DH_CInterPro:6-PGluconate_DH-like_C_sfInterPro:6PGD_dom2GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0003857GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005777GO:GO:0006629GO:GO:0006631GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016491GO:GO:0055114GO:GO:0070403InterPro:IPR013328
UniProt:K4CGY4InterPro:NAD(P)-bd_dom_sfPFAM:PF00725PFAM:PF02737PIRSF:PIRSF000105ScanProsite:PS00067
PANTHER:PTHR43145PANTHER:PTHR43145:SF4SUPFAM:SSF48179SUPFAM:SSF51735EnsemblPlantsGene:Solyc07g063010.2EnsemblPlants:Solyc07g063010.2.1
UniParc:UPI000276BA58:::::
Description
No Description!
Coordinates
chr7:+:65620953..65624079
Molecular Weight (calculated)
31848.8 Da
IEP (calculated)
8.347
GRAVY (calculated)
0.045
Length
296 amino acids
Sequence
(BLAST)
001: MADITRIGVV GAGQMGAGIA QLAAVNGVDV WLYDLDSEAL TKAQKSISNN IQRLLTKGQI SQATSVDAVK RLRCSSRLDD LQSVDIVVEA IVESEQVKKS
101: LFANLDKIVK SSAILASNTS SISITRLASA TSRPSQVIGM HFMNPPPIMK LVEIIRGADT SEDTYCATKC LAERFGKTVI CSQDYSGFIV NRILMPMINE
201: AFHTLYTGVA TKEDIDTGMK LGTNHPMGPL ELADFIGLDV CLSIMKVLQA GLGDDKYAPC PLLVQYVDAG RLGKKRGVGV YDYRNAAKKT GGSPRL
Best Arabidopsis Sequence Match ( AT3G15290.1 )
(BLAST)
001: MAEMKSVGVV GAGQMGSGIA QLAATSGLDV WLMDADRDAL SRATAAISSS VKRFVSKGLI SKEVGDDAMH RLRLTSNLED LCSADIIVEA IVESEDIKKK
101: LFKDLDGIAK SSAILASNTS SISITRLASA TRRPSQVIGM HFMNPPPIMK LVEIIRGADT SEETFLATKV LAERFGKTTV CSQDYAGFVV NRILMPMINE
201: AFHTLYTGVA TKEDIDSGMK HGTNHPMGPL ELADLIGLDV CLSVMKVLHE GLGDSKYAPC PLLVQYVDAG RLGRKRGVGV YDYREATQKL SPRL
Arabidopsis Description
3-hydroxyacyl-CoA dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LDF5]
SUBAcon: [mitochondrion,peroxisome,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.