Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98542 | Canola | peroxisome | 90.14 | 91.38 |
| Bra027263.1-P | Field mustard | peroxisome | 90.82 | 90.82 |
| CDX97647 | Canola | peroxisome | 90.48 | 84.44 |
| VIT_19s0014g02370.t01 | Wine grape | peroxisome | 77.55 | 77.03 |
| Solyc07g063010.2.1 | Tomato | nucleus | 76.19 | 75.68 |
| PGSC0003DMT400032309 | Potato | peroxisome | 76.19 | 75.68 |
| KRH55235 | Soybean | peroxisome | 61.56 | 72.69 |
| GSMUA_Achr9P20010_001 | Banana | peroxisome | 70.41 | 69.46 |
| EES01597 | Sorghum | peroxisome, plasma membrane | 70.07 | 68.9 |
| TraesCS3D01G321200.1 | Wheat | peroxisome | 71.09 | 68.75 |
| KRH55427 | Soybean | nucleus | 74.49 | 68.65 |
| Os01t0796400-01 | Rice | nucleus | 70.07 | 68.21 |
| TraesCS3A01G327700.1 | Wheat | peroxisome | 70.41 | 68.09 |
| Zm00001d012590_P001 | Maize | extracellular | 68.37 | 67.22 |
| TraesCS3B01G357200.1 | Wheat | peroxisome | 71.09 | 62.95 |
| AT3G06860.1 | Thale cress | peroxisome | 27.89 | 11.31 |
| AT4G29010.1 | Thale cress | peroxisome | 27.55 | 11.23 |
| AT4G16800.1 | Thale cress | mitochondrion | 5.44 | 5.32 |
| HORVU5Hr1G076170.6 | Barley | plastid | 5.1 | 5.05 |
| HORVU6Hr1G021980.6 | Barley | cytosol | 3.74 | 3.91 |
| AT4G16210.1 | Thale cress | peroxisome | 3.4 | 3.77 |
| AT5G43280.1 | Thale cress | peroxisome | 3.4 | 3.6 |
| AT1G60550.1 | Thale cress | cytosol | 3.74 | 3.26 |
Protein Annotations
| KEGG:00062+4.2.1.17+1.1.1.35 | KEGG:00071+4.2.1.17+1.1.1.35 | KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35 | KEGG:00120+1.1.1.35 | KEGG:00280+4.2.1.17+1.1.1.35 | KEGG:00281+4.2.1.17+1.1.1.35 |
| KEGG:00310+4.2.1.17+1.1.1.35 | KEGG:00360+4.2.1.17 | KEGG:00362+4.2.1.17+1.1.1.35 | KEGG:00380+4.2.1.17+1.1.1.35 | KEGG:00410+4.2.1.17 | KEGG:00592+4.2.1.17 |
| KEGG:00623+1.1.1.35 | KEGG:00627+4.2.1.17 | KEGG:00640+4.2.1.17 | KEGG:00650+4.2.1.17+1.1.1.35 | KEGG:00650+5.1.2.3+4.2.1.17+1.1.1.35 | KEGG:00720+4.2.1.17+1.1.1.35 |
| KEGG:00903+4.2.1.17 | KEGG:00930+4.2.1.17+1.1.1.35 | Gene3D:1.10.1040.10 | InterPro:3-OHacyl-CoA_DH | InterPro:3-OHacyl-CoA_DH_CS | InterPro:3-OHacyl-CoA_DH_NAD-bd |
| Gene3D:3.40.50.720 | MapMan:35.1 | InterPro:3HC_DH_C | InterPro:6-PGluconate_DH-like_C_sf | InterPro:6PGD_dom2 | EntrezGene:820760 |
| UniProt:A0A178VAP2 | ProteinID:AEE75641.1 | ArrayExpress:AT3G15290 | EnsemblPlantsGene:AT3G15290 | RefSeq:AT3G15290 | TAIR:AT3G15290 |
| RefSeq:AT3G15290-TAIR-G | EnsemblPlants:AT3G15290.1 | TAIR:AT3G15290.1 | Unigene:At.24398 | ProteinID:BAB02158.1 | EMBL:BT000454 |
| EMBL:BT001208 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003857 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005777 | GO:GO:0006629 |
| GO:GO:0006631 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016491 | GO:GO:0055114 |
| GO:GO:0070403 | InterPro:IPR013328 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_188147.1 | ProteinID:OAP02022.1 | PFAM:PF00725 |
| PFAM:PF02737 | PIRSF:PIRSF000105 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| ScanProsite:PS00067 | PANTHER:PTHR43145 | PANTHER:PTHR43145:SF4 | UniProt:Q9LDF5 | SUPFAM:SSF48179 | SUPFAM:SSF51735 |
| UniParc:UPI00000AC4B2 | : | : | : | : | : |
Description
3-hydroxyacyl-CoA dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LDF5]
Coordinates
chr3:+:5144938..5146860
Molecular Weight (calculated)
31691.6 Da
IEP (calculated)
7.114
GRAVY (calculated)
0.029
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEMKSVGVV GAGQMGSGIA QLAATSGLDV WLMDADRDAL SRATAAISSS VKRFVSKGLI SKEVGDDAMH RLRLTSNLED LCSADIIVEA IVESEDIKKK
101: LFKDLDGIAK SSAILASNTS SISITRLASA TRRPSQVIGM HFMNPPPIMK LVEIIRGADT SEETFLATKV LAERFGKTTV CSQDYAGFVV NRILMPMINE
201: AFHTLYTGVA TKEDIDSGMK HGTNHPMGPL ELADLIGLDV CLSVMKVLHE GLGDSKYAPC PLLVQYVDAG RLGRKRGVGV YDYREATQKL SPRL
101: LFKDLDGIAK SSAILASNTS SISITRLASA TRRPSQVIGM HFMNPPPIMK LVEIIRGADT SEETFLATKV LAERFGKTTV CSQDYAGFVV NRILMPMINE
201: AFHTLYTGVA TKEDIDSGMK HGTNHPMGPL ELADLIGLDV CLSVMKVLHE GLGDSKYAPC PLLVQYVDAG RLGRKRGVGV YDYREATQKL SPRL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.