Factsheet for AT1G60550.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47214	Canola	cytosol, mitochondrion, peroxisome	89.02	90.91
Bra027150.1-P	Field mustard	cytosol, mitochondrion, peroxisome	89.91	89.64
CDY53045	Canola	cytosol, mitochondrion, peroxisome	89.02	88.76
PGSC0003DMT400035160	Potato	mitochondrion	78.04	77.35
Solyc05g005180.2.1	Tomato	nucleus	77.15	77.15
VIT_01s0127g00420.t01	Wine grape	mitochondrion	75.67	75.89
KRH45650	Soybean	nucleus	75.37	74.93
GSMUA_Achr4P07800_001	Banana	mitochondrion	73.89	74.33
KRG99357	Soybean	nucleus	74.18	74.18
TraesCS3D01G241000.1	Wheat	mitochondrion	72.4	73.49
TraesCS3B01G268700.1	Wheat	mitochondrion	72.4	73.49
TraesCS3A01G240600.1	Wheat	mitochondrion	72.4	73.49
Zm00001d043970_P001	Maize	mitochondrion	73.0	73.21
Os01t0662700-01	Rice	mitochondrion	71.51	72.81
EES06293	Sorghum	plastid	72.4	72.19
HORVU3Hr1G059840.4	Barley	plastid	73.0	68.33
AT4G16210.1	Thale cress	peroxisome	22.26	28.3
AT4G16800.1	Thale cress	mitochondrion	21.66	24.25
AT5G43280.1	Thale cress	peroxisome	19.88	24.1
AT4G29010.1	Thale cress	peroxisome	20.18	9.43
AT3G06860.1	Thale cress	peroxisome	19.29	8.97
AT3G15290.1	Thale cress	cytosol, mitochondrion, peroxisome	3.26	3.74

Protein Annotations

KEGG:00130+4.1.3.36	Gene3D:1.10.12.10	Gene3D:3.90.226.10	MapMan:7.13.4	EntrezGene:842350	ProteinID:AAB71952.1
ProteinID:AEE33696.1	EMBL:AK117477	ArrayExpress:AT1G60550	EnsemblPlantsGene:AT1G60550	RefSeq:AT1G60550	TAIR:AT1G60550
RefSeq:AT1G60550-TAIR-G	EnsemblPlants:AT1G60550.1	TAIR:AT1G60550.1	Unigene:At.36633	EMBL:BT033085	InterPro:ClpP/crotonase-like_dom_sf
InterPro:DHNA-CoA_synthase_MenB	Symbol:ECHID	InterPro:Enoyl-CoA_hyd/isom_CS	InterPro:Enoyl-CoA_hydra/iso	InterPro:Enoyl-CoA_hydra_C	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777
GO:GO:0008150	GO:GO:0008152	GO:GO:0008935	GO:GO:0009058	GO:GO:0009234	GO:GO:0009987
GO:GO:0016829	GO:GO:0016853	GO:GO:0042372	InterPro:IPR014748	HAMAP:MF_01934	RefSeq:NP_176255.2
PFAM:PF00378	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
ScanProsite:PS00166	PANTHER:PTHR43113	PANTHER:PTHR43113:SF1	UniProt:Q8GYN9	SUPFAM:SSF52096	TIGRFAMs:TIGR01929
UniParc:UPI00001970D9	:	:	:	:	:

Description

MENB1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8GYN9]

Coordinates

chr1:-:22305780..22308289

Molecular Weight (calculated)

37058.3 Da

IEP (calculated)

7.285

GRAVY (calculated)

-0.299

Length

337 amino acids

Sequence
(BLAST)

001: MADSNELGSA SRRLSVVTNH LIPIGFSPAR ADSVELCSAS SMDDRFHKVH GEVPTHEVVW KKTDFFGEGD NKEFVDIIYE KALDEGIAKI TINRPERRNA
101: FRPQTVKELM RAFNDARDDS SVGVIILTGK GTKAFCSGGD QALRTQDGYA DPNDVGRLNV LDLQVQIRRL PKPVIAMVAG YAVGGGHILH MVCDLTIAAD
201: NAIFGQTGPK VGSFDAGYGS SIMSRLVGPK KAREMWFMTR FYTASEAEKM GLINTVVPLE DLEKETVKWC REILRNSPTA IRVLKAALNA VDDGHAGLQG
301: LGGDATLLFY GTEEATEGRT AYMHRRPPDF SKFHRRP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.