Factsheet for VIT_01s0127g00420.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P07800_001	Banana	mitochondrion	79.76	80.0
CDY47214	Canola	cytosol, mitochondrion, peroxisome	76.79	78.18
Solyc05g005180.2.1	Tomato	nucleus	77.98	77.74
PGSC0003DMT400035160	Potato	mitochondrion	78.57	77.65
Bra027150.1-P	Field mustard	cytosol, mitochondrion, peroxisome	77.68	77.22
Zm00001d043970_P001	Maize	mitochondrion	76.19	76.19
Os01t0662700-01	Rice	mitochondrion	74.7	75.83
CDY53045	Canola	cytosol, mitochondrion, peroxisome	76.19	75.74
AT1G60550.1	Thale cress	cytosol	75.89	75.67
TraesCS3D01G241000.1	Wheat	mitochondrion	74.7	75.6
TraesCS3A01G240600.1	Wheat	mitochondrion	74.7	75.6
KRH45650	Soybean	nucleus	76.19	75.52
EES06293	Sorghum	plastid	75.89	75.44
TraesCS3B01G268700.1	Wheat	mitochondrion	74.4	75.3
KRG99357	Soybean	nucleus	74.7	74.48
HORVU3Hr1G059840.4	Barley	plastid	75.3	70.28
VIT_05s0077g00860.t01	Wine grape	peroxisome, plastid	22.32	28.2
VIT_02s0234g00080.t01	Wine grape	mitochondrion	20.54	23.39
VIT_01s0146g00270.t01	Wine grape	peroxisome	18.75	22.91
VIT_11s0016g03690.t01	Wine grape	peroxisome	19.94	9.25
VIT_05s0077g02140.t01	Wine grape	peroxisome	18.45	8.56
VIT_19s0014g02370.t01	Wine grape	peroxisome	2.98	3.38

Protein Annotations

KEGG:00130+4.1.3.36	Gene3D:1.10.12.10	EntrezGene:100246470	wikigene:100246470	Gene3D:3.90.226.10	MapMan:7.13.4
EMBL:AM447111	ProteinID:CAN74179	ProteinID:CAN74179.1	ProteinID:CBI28551	ProteinID:CBI28551.3	InterPro:ClpP/crotonase-like_dom_sf
UniProt:D7TDH8	InterPro:DHNA-CoA_synthase_MenB	InterPro:Enoyl-CoA_hyd/isom_CS	InterPro:Enoyl-CoA_hydra/iso	InterPro:Enoyl-CoA_hydra_C	EMBL:FN595761
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0008935	GO:GO:0009058	GO:GO:0009234
GO:GO:0009987	InterPro:IPR014748	EntrezGene:LOC100246470	wikigene:LOC100246470	HAMAP:MF_01934	PFAM:PF00378
ScanProsite:PS00166	PANTHER:PTHR43113	PANTHER:PTHR43113:SF1	SUPFAM:SSF52096	TIGR:TC60088	TIGRFAMs:TIGR01929
UniParc:UPI00015CCBED	ArrayExpress:VIT_01s0127g00420	EnsemblPlantsGene:VIT_01s0127g00420	EnsemblPlants:VIT_01s0127g00420.t01	unigene:Vvi.13476	RefSeq:XP_002267500
RefSeq:XP_002267500.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:7756597..7759711

Molecular Weight (calculated)

36927.9 Da

IEP (calculated)

8.923

GRAVY (calculated)

-0.368

Length

336 amino acids

Sequence
(BLAST)

001: MAQIANKDLN ANARRRLASV AHHLTPLHST TPNCSSLGFH TTSAPDSYRR VHGEVPTHDV TWNPACDESG KAFTDIIYEK AVGEAIAKIT INRPERRNAF
101: RPNTVKELIR AFNDARDDSS VGVIIFTGKG TKAFCSGGDQ AFRGRDGYAD HDDFGRLNVL DLQMQIRRLP KPVIAMVAGY AVGGGHVLHM VCDLTIAADN
201: AIFGQTGPKV GSFDSGYGSS IMSRLIGPKK AREMWFTARF YTASEAEKMG LVNIVVQLEN LEKETVKWCR EILRNSPTAI RVLKSALNAV DDGHAGLQEL
301: GGNATFIFYG TEEGNEGKTA YLERRPPDFS KFPRRP

Best Arabidopsis Sequence Match ( AT1G60550.1 )
(BLAST)

001: MADSNELGSA SRRLSVVTNH LIPIGFSPAR ADSVELCSAS SMDDRFHKVH GEVPTHEVVW KKTDFFGEGD NKEFVDIIYE KALDEGIAKI TINRPERRNA
101: FRPQTVKELM RAFNDARDDS SVGVIILTGK GTKAFCSGGD QALRTQDGYA DPNDVGRLNV LDLQVQIRRL PKPVIAMVAG YAVGGGHILH MVCDLTIAAD
201: NAIFGQTGPK VGSFDAGYGS SIMSRLVGPK KAREMWFMTR FYTASEAEKM GLINTVVPLE DLEKETVKWC REILRNSPTA IRVLKAALNA VDDGHAGLQG
301: LGGDATLLFY GTEEATEGRT AYMHRRPPDF SKFHRRP

Arabidopsis Description

MENB1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8GYN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.