Factsheet for VIT_01s0146g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
peroxisome 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0051g00720.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43280.1	VIT_05s0051g00720.t01	AT2G33150.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G43280.1	Thale cress	peroxisome	74.91	74.1
CDY43605	Canola	peroxisome	72.73	72.46
Bra027479.1-P	Field mustard	peroxisome	72.36	72.1
CDY32958	Canola	peroxisome	72.0	71.74
KRH66641	Soybean	peroxisome	69.82	70.33
Solyc05g024240.2.1	Tomato	nucleus	55.64	65.95
GSMUA_Achr7P22470_001	Banana	peroxisome	57.82	55.02
TraesCS3A01G438000.1	Wheat	peroxisome	54.18	51.38
TraesCS3B01G472000.1	Wheat	peroxisome	54.18	51.38
TraesCS3D01G430300.1	Wheat	peroxisome	54.18	51.38
TraesCS3D01G430400.2	Wheat	peroxisome	53.45	50.69
Os01t0925200-01	Rice	nucleus, plasma membrane	53.45	50.52
Zm00001d011971_P001	Maize	mitochondrion, peroxisome	52.73	50.35
TraesCS3A01G438100.1	Wheat	peroxisome	53.09	50.34
KXG34022	Sorghum	peroxisome	53.45	50.0
VIT_02s0234g00080.t01	Wine grape	mitochondrion	28.36	26.44
VIT_05s0077g00860.t01	Wine grape	peroxisome, plastid	23.27	24.06
VIT_01s0127g00420.t01	Wine grape	mitochondrion	22.91	18.75
VIT_05s0077g02140.t01	Wine grape	peroxisome	23.64	8.98
VIT_11s0016g03690.t01	Wine grape	peroxisome	20.0	7.6
VIT_19s0014g02370.t01	Wine grape	peroxisome	4.36	4.05

Protein Annotations

Gene3D:1.10.12.10	EntrezGene:100249010	wikigene:100249010	Gene3D:3.90.226.10	MapMan:5.7.3.5.2	ProteinID:CBI38168
ProteinID:CBI38168.3	InterPro:ClpP/crotonase-like_dom_sf	UniProt:D7U5Z9	InterPro:Enoyl-CoA_hyd/isom_CS	InterPro:Enoyl-CoA_hydra/iso	InterPro:Enoyl-CoA_hydra_C
EMBL:FN596513	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:IPR014748
EntrezGene:LOC100249010	wikigene:LOC100249010	PFAM:PF00378	ScanProsite:PS00166	PANTHER:PTHR43149	PANTHER:PTHR43149:SF1
SUPFAM:SSF52096	UniParc:UPI00015CCF8B	ArrayExpress:VIT_01s0146g00270	EnsemblPlantsGene:VIT_01s0146g00270	EnsemblPlants:VIT_01s0146g00270.t01	unigene:Vvi.12049
RefSeq:XP_002265340	RefSeq:XP_002265340.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:22080304..22083330

Molecular Weight (calculated)

29620.6 Da

IEP (calculated)

7.896

GRAVY (calculated)

0.043

Length

275 amino acids

Sequence
(BLAST)

001: MENYKTLEIV QRSPKSSVFH LNLNRPSLRN ALSLDFFSEF PKALDSLDQN PNVSVIILSG NGAHFCSGID LKVLDSISER SQSSDRGRTG ERLRRHIKFL
101: QDAITAIEHC RKPVIAGIHG ACIGAGIDVV TACDIRFCTE DAFFSVKEVD LAITADVGTL QRLPSIVGYG NAVELALTGR RFSGSEAKSL GLVSTVFASK
201: EAMDEGIRLV AEGIAAKSPL AVTGTKAVLL RGRDLTVDQG LDYVATWNSG MLLSGDLAEA VSAQIQKRKP VFAKL

Best Arabidopsis Sequence Match ( AT5G43280.1 )
(BLAST)

001: MTMESYKTLE IIRKNTDSSV FHLIINRPSH LNALSLDFFI EFPKALSSLD QNPDVSVIIL SGAGKHFCSG IDLNSLSSIS TQSSSGNDRG RSSEQLRRKI
101: KSMQAAITAI EQCRKPVIAA IHGACIGGGV DLITACDIRY CSEDAFFSIK EVDLAIVADL GTLQRLPSIV GYANAMELAL TARRFSGSEA KDLGLVSKVF
201: GSKSELDNGV TTIAEGIGGK SPLAVTGTKA VLLRSREVSV EQGLDYVATW NSAMLISDDL NEAVSAQMMK RKPRFAKL

Arabidopsis Description

DCI1Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9FHR8]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.