CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90241
KRH33469

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43280.1	KRG90241	AT2G33150.1	24879895
AT5G43280.1	KRH33469	AT2G33150.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0146g00270.t01	Wine grape	peroxisome	70.33	69.82
CDY43605	Canola	peroxisome	66.67	65.94
Bra027479.1-P	Field mustard	peroxisome	66.3	65.58
CDY32958	Canola	peroxisome	65.93	65.22
AT5G43280.1	Thale cress	peroxisome	65.93	64.75
Solyc05g024240.2.1	Tomato	nucleus	50.92	59.91
GSMUA_Achr7P22470_001	Banana	peroxisome	56.41	53.29
Os01t0925200-01	Rice	nucleus, plasma membrane	54.95	51.55
Zm00001d011971_P001	Maize	mitochondrion, peroxisome	54.21	51.39
TraesCS3D01G430300.1	Wheat	peroxisome	54.58	51.38
TraesCS3B01G472000.1	Wheat	peroxisome	54.58	51.38
TraesCS3A01G438000.1	Wheat	peroxisome	54.58	51.38
KXG34022	Sorghum	peroxisome	54.95	51.02
TraesCS3D01G430400.2	Wheat	peroxisome	53.85	50.69
TraesCS3A01G438100.1	Wheat	peroxisome	53.48	50.34
KRH50718	Soybean	plastid	16.48	27.11
KRH57489	Soybean	mitochondrion	27.84	24.68
KRH02364	Soybean	peroxisome	23.44	24.15
KRH04196	Soybean	mitochondrion	27.11	23.57
KRG99357	Soybean	nucleus	24.18	19.58
KRH45650	Soybean	nucleus	24.18	19.47
KRH50717	Soybean	mitochondrion, peroxisome	7.69	18.1
KRG94502	Soybean	peroxisome	8.42	9.91
KRH02268	Soybean	nucleus	24.91	9.42
KRH02269	Soybean	peroxisome	23.81	8.99
KRH50818	Soybean	nucleus	23.44	8.84
KRH39301	Soybean	endoplasmic reticulum, mitochondrion, nucleus	21.98	8.29
KRH48371	Soybean	nucleus	21.25	8.01
KRH55235	Soybean	peroxisome	4.03	4.42
KRH50819	Soybean	cytosol, extracellular, peroxisome	1.1	4.17
KRH55427	Soybean	nucleus	4.4	3.76
KRH25463	Soybean	extracellular	1.1	3.53

Protein Annotations

Gene3D:1.10.12.10	EntrezGene:100804855	Gene3D:3.90.226.10	MapMan:5.7.3.5.2	EMBL:ACUP02001998	EMBL:BT096911
UniProt:C6TH01	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hyd/isom_CS	InterPro:Enoyl-CoA_hydra/iso	InterPro:Enoyl-CoA_hydra_C	EnsemblPlantsGene:GLYMA_03G119400
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:IPR014748	EnsemblPlants:KRH66641
ProteinID:KRH66641	ProteinID:KRH66641.1	PFAM:PF00378	ScanProsite:PS00166	PANTHER:PTHR43149	PANTHER:PTHR43149:SF1
SUPFAM:SSF52096	UniParc:UPI0001B16DEB	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:33050316..33052747

Molecular Weight (calculated)

29332.5 Da

IEP (calculated)

7.102

GRAVY (calculated)

0.091

Length

273 amino acids

Sequence
(BLAST)

001: MEEKYSSLEI VEESPNSGVF FLILNRPSRR NALSREFFSE FPKALHALDH NPEVKVIVLS GAGDHFCSGI DLSLLGSTAA SSGSSGSGET LRREIMAMQD
101: AVTALERCRK PVIASVHGAC IGGGIDIVTA CDIRMCSEEA FFSVKEVDLA LAADLGTLQR LPLIVGFGNA MELALTGRTF SGKEAKELGL VSRVFLSKHD
201: LHQAVRDVAQ AIATKSPLAV VGTKTVLLKS RDLTVDQGLD YVATLNSARL LSPDLTEAVM AQKQKRKPVF SKL

Best Arabidopsis Sequence Match ( AT5G43280.1 )
(BLAST)

001: MTMESYKTLE IIRKNTDSSV FHLIINRPSH LNALSLDFFI EFPKALSSLD QNPDVSVIIL SGAGKHFCSG IDLNSLSSIS TQSSSGNDRG RSSEQLRRKI
101: KSMQAAITAI EQCRKPVIAA IHGACIGGGV DLITACDIRY CSEDAFFSIK EVDLAIVADL GTLQRLPSIV GYANAMELAL TARRFSGSEA KDLGLVSKVF
201: GSKSELDNGV TTIAEGIGGK SPLAVTGTKA VLLRSREVSV EQGLDYVATW NSAMLISDDL NEAVSAQMMK RKPRFAKL

Arabidopsis Description

DCI1Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9FHR8]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.