CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
peroxisome 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50819	Soybean	cytosol, extracellular, peroxisome	9.42	94.44
KRH50818	Soybean	nucleus	89.61	89.36
KRH02269	Soybean	peroxisome	89.2	89.07
KRH25463	Soybean	extracellular	10.25	87.06
VIT_05s0077g02140.t01	Wine grape	peroxisome	79.64	79.42
PGSC0003DMT400011792	Potato	peroxisome	77.56	77.03
AT3G06860.1	Thale cress	peroxisome	77.15	76.83
Solyc12g099440.1.1	Tomato	nucleus	76.87	76.34
Bra040296.1-P	Field mustard	peroxisome	75.62	75.31
CDY24662	Canola	peroxisome	75.62	75.21
Bra029608.1-P	Field mustard	peroxisome	75.35	75.03
CDY34924	Canola	peroxisome	75.48	74.97
CDY05296	Canola	peroxisome	75.07	74.76
CDX74076	Canola	peroxisome	74.93	74.52
CDY08028	Canola	peroxisome	74.93	74.52
Bra001221.1-P	Field mustard	peroxisome	74.65	74.34
GSMUA_Achr2P01720_001	Banana	peroxisome	73.41	73.61
PGSC0003DMT400029427	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	27.15	69.5
Solyc01g066620.2.1	Tomato	plastid	66.76	67.6
EES18080	Sorghum	peroxisome	65.79	66.16
Zm00001d037939_P003	Maize	peroxisome	65.65	66.02
TraesCS1A01G231100.1	Wheat	peroxisome	65.51	65.79
HORVU1Hr1G058880.12	Barley	peroxisome	64.82	65.18
TraesCS1D01G231000.1	Wheat	golgi, peroxisome, unclear	64.68	64.95
TraesCS1B01G243300.1	Wheat	peroxisome	61.91	64.32
KRG94502	Soybean	peroxisome	20.64	64.22
Os05t0362100-01	Rice	cytosol, mitochondrion, peroxisome	40.3	62.58
GSMUA_Achr3P24070_001	Banana	cytosol, peroxisome, plastid	61.5	62.01
KRH48371	Soybean	nucleus	56.79	56.63
KRH39301	Soybean	endoplasmic reticulum, mitochondrion, nucleus	56.51	56.35
KRH55235	Soybean	peroxisome	9.56	27.71
KRH57489	Soybean	mitochondrion	11.36	26.62
KRH04196	Soybean	mitochondrion	11.22	25.8
KRH55427	Soybean	nucleus	11.36	25.71
KRH66641	Soybean	peroxisome	9.42	24.91
KRH50718	Soybean	plastid	5.4	23.49
KRH02364	Soybean	peroxisome	8.03	21.89
KRH50717	Soybean	mitochondrion, peroxisome	3.46	21.55
KRG99357	Soybean	nucleus	8.86	18.99
KRH45650	Soybean	nucleus	8.73	18.58

Protein Annotations

KEGG:00062+4.2.1.17+1.1.1.35	KEGG:00071+4.2.1.17+1.1.1.35	KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35	KEGG:00120+1.1.1.35	KEGG:00280+4.2.1.17+1.1.1.35	KEGG:00281+4.2.1.17+1.1.1.35
KEGG:00310+4.2.1.17+1.1.1.35	KEGG:00360+4.2.1.17	KEGG:00362+4.2.1.17+1.1.1.35	KEGG:00380+4.2.1.17+1.1.1.35	KEGG:00410+4.2.1.17	KEGG:00592+4.2.1.17
KEGG:00623+1.1.1.35	KEGG:00627+4.2.1.17	KEGG:00640+4.2.1.17	KEGG:00650+4.2.1.17+1.1.1.35	KEGG:00650+5.1.2.3+4.2.1.17+1.1.1.35	KEGG:00720+4.2.1.17+1.1.1.35
KEGG:00903+4.2.1.17	KEGG:00930+4.2.1.17+1.1.1.35	Gene3D:1.10.1040.50	EntrezGene:100813542	InterPro:3-OHacyl-CoA_DH_CS	InterPro:3-OHacyl-CoA_DH_NAD-bd
Gene3D:3.40.50.720	Gene3D:3.90.226.10	InterPro:3HC_DH_C	MapMan:5.7.3.2.2	InterPro:6-PGluconate_DH-like_C_sf	EMBL:ACUP02010302
InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hydra/iso	EnsemblPlantsGene:GLYMA_17G027600	GO:GO:0003674	GO:GO:0003824	GO:GO:0003857
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006629
GO:GO:0006631	GO:GO:0006635	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016491	GO:GO:0055114	UniProt:I1MRJ8	EnsemblPlants:KRH02268	ProteinID:KRH02268	ProteinID:KRH02268.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00378	PFAM:PF00725	PFAM:PF02737	ScanProsite:PS00067	PANTHER:PTHR23309
PANTHER:PTHR23309:SF23	MetaCyc:PWY-1361	MetaCyc:PWY-5109	MetaCyc:PWY-5136	MetaCyc:PWY-5138	MetaCyc:PWY-5177
MetaCyc:PWY-5789	MetaCyc:PWY-6435	MetaCyc:PWY-6583	MetaCyc:PWY-6863	MetaCyc:PWY-6883	MetaCyc:PWY-6944
MetaCyc:PWY-6945	MetaCyc:PWY-6946	MetaCyc:PWY-7007	MetaCyc:PWY-7046	MetaCyc:PWY-7094	MetaCyc:PWY-7216
MetaCyc:PWY-735	MetaCyc:PWY-7401	MetaCyc:PWY-7606	MetaCyc:PWY-7654	MetaCyc:PWY-7656	MetaCyc:PWY-7726
MetaCyc:PWY-7778	MetaCyc:PWY-7779	MetaCyc:PWY-81	SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52096
UniParc:UPI000233E68E	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:2043940..2051649

Molecular Weight (calculated)

78993.5 Da

IEP (calculated)

8.965

GRAVY (calculated)

0.002

Length

722 amino acids

Sequence
(BLAST)

001: MSRSRGHTIM EVGPDGVAII TIVNPPVNSL SYDVLRSFKE NFDQALQRDD VKAIVVTGAK GRFSGGFDIS AFGAQKPEER PKPGWLSVEI ITDTIEAARK
101: PLVAAIDGLA LGGGLEFAMA CNARLSTPTA KLGLPELQLG IIPGLGGTQR LPRLVGLTKA LEMMLTSKPV KGKEAFSLGL VDGLMSPDDL VNTACQWALD
201: IMGRRRPWIA SLYKTDKLEP LGEAREILKF ARAQVQKRAP NLQHPLVCID VIEAGVVAGP RAGLWKEVEA SEGLIKSDTS KSLIHVFFSQ RGTSKVPGVT
301: DCGLVPRHVK KVAIIGGGLM GSGIATALIL SSYPIILKEV NEKFLEAGIN RIKANLQSRV KKGKLTQENF ENTVSLLKGT LDYESFKDVD MVIEAVVENV
401: SLKQQIFADL EKYCPPHCIL ASNTSTIDLN LIGERTKSQD RIVGAHFFSP AHVMPLLEIV RTKQTSAQVV VDVLDISKKI KKTPVVVGNC TGFAVNRMFF
501: PYTQAGLFLV EHGADVYQID RVITKFGMPM GPFRLVDLVG FGVAIATGMQ FIQNFPERTY KSMLIPLLQE DKRAGETTRK GFYLYDDKCK PSPDPELKNY
601: IEKARSFTGV SVDPKLVKLQ EKDIIEMTFF PVVNEACRVL DEGIAVKGSD LDISAVMGMG FPPYRGGILF WADSLGSKYI YSKLEKWSEL YGEFFKPCAY
701: LAARAAKGIP LSASVEQANS RL

Best Arabidopsis Sequence Match ( AT3G06860.1 )
(BLAST)

001: MDSRTKGKTV MEVGGDGVAV ITLINPPVNS LSFDVLYNLK SNYEEALSRN DVKAIVITGA KGRFSGGFDI SGFGEMQKGN VKEPKAGYIS IDIITDLLEA
101: ARKPSVAAID GLALGGGLEL AMACHARISA PAAQLGLPEL QLGVIPGFGG TQRLPRLVGL TKALEMILTS KPVKAEEGHS LGLIDAVVPP AELVTTARRW
201: ALDIVGRRKP WVSSVSKTDK LPPLGEAREI LTFAKAQTLK RAPNMKHPLM CLDAIEVGIV SGPRAGLEKE AEVASQVVKL DTTKGLIHVF FSQRGTAKVP
301: GVTDRGLVPR KIKKVAIIGG GLMGSGIATA LILSNYPVIL KEVNEKFLEA GIGRVKANLQ SRVRKGSMSQ EKFEKTMSLL KGSLDYESFR DVDMVIEAVI
401: ENISLKQQIF ADLEKYCPQH CILASNTSTI DLNKIGERTK SQDRIVGAHF FSPAHIMPLL EIVRTNHTSA QVIVDLLDVG KKIKKTPVVV GNCTGFAVNR
501: MFFPYTQAAM FLVECGADPY LIDRAISKFG MPMGPFRLCD LVGFGVAIAT ATQFIENFSE RTYKSMIIPL MQEDKRAGEA TRKGFYLYDD KRKAKPDPEL
601: KKYIEKARSI SGVKLDPKLA NLSEKDIIEM TFFPVVNEAC RVFAEGIAVK AADLDIAGIM GMGFPPYRGG IMFWADSIGS KYIYSRLDEW SKAYGEFFKP
701: CAFLAERGSK GVLLSAPVKQ ASSRL

Arabidopsis Description

MFP2Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPI5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.