CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 3
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99357	Soybean	nucleus	93.81	94.36
CDY47214	Canola	cytosol, mitochondrion, peroxisome	74.34	76.36
VIT_01s0127g00420.t01	Wine grape	mitochondrion	75.52	76.19
TraesCS3D01G241000.1	Wheat	mitochondrion	74.34	75.9
TraesCS3A01G240600.1	Wheat	mitochondrion	74.34	75.9
TraesCS3B01G268700.1	Wheat	mitochondrion	74.04	75.6
Os01t0662700-01	Rice	mitochondrion	73.75	75.53
AT1G60550.1	Thale cress	cytosol	74.93	75.37
EES06293	Sorghum	plastid	74.63	74.85
Zm00001d043970_P001	Maize	mitochondrion	73.75	74.4
Bra027150.1-P	Field mustard	cytosol, mitochondrion, peroxisome	73.75	73.96
CDY53045	Canola	cytosol, mitochondrion, peroxisome	73.45	73.67
Solyc05g005180.2.1	Tomato	nucleus	73.16	73.59
PGSC0003DMT400035160	Potato	mitochondrion	73.75	73.53
GSMUA_Achr4P07800_001	Banana	mitochondrion	72.57	73.43
HORVU3Hr1G059840.4	Barley	plastid	74.93	70.56
KRH02364	Soybean	peroxisome	20.35	26.04
KRH50718	Soybean	plastid	12.39	25.3
KRH04196	Soybean	mitochondrion	22.42	24.2
KRH66641	Soybean	peroxisome	19.47	24.18
KRH57489	Soybean	mitochondrion	21.53	23.7
KRH50717	Soybean	mitochondrion, peroxisome	7.96	23.28
KRG94502	Soybean	peroxisome	7.96	11.64
KRH39301	Soybean	endoplasmic reticulum, mitochondrion, nucleus	20.94	9.81
KRH48371	Soybean	nucleus	20.65	9.67
KRH02269	Soybean	peroxisome	18.88	8.85
KRH50818	Soybean	nucleus	18.88	8.84
KRH02268	Soybean	nucleus	18.58	8.73
KRH50819	Soybean	cytosol, extracellular, peroxisome	1.18	5.56
KRH55235	Soybean	peroxisome	2.65	3.61
KRH25463	Soybean	extracellular	0.88	3.53
KRH55427	Soybean	nucleus	2.95	3.13

Protein Annotations

KEGG:00130+4.1.3.36	Gene3D:1.10.12.10	EntrezGene:100807101	Gene3D:3.90.226.10	MapMan:7.13.4	EMBL:ACUP02005275
EMBL:BT095877	UniProt:C6TE57	InterPro:ClpP/crotonase-like_dom_sf	InterPro:DHNA-CoA_synthase_MenB	InterPro:Enoyl-CoA_hyd/isom_CS	InterPro:Enoyl-CoA_hydra/iso
InterPro:Enoyl-CoA_hydra_C	EnsemblPlantsGene:GLYMA_08G285500	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0008935	GO:GO:0009058	GO:GO:0009234	GO:GO:0009987	InterPro:IPR014748	EnsemblPlants:KRH45650
ProteinID:KRH45650	ProteinID:KRH45650.1	HAMAP:MF_01934	PFAM:PF00378	ScanProsite:PS00166	PANTHER:PTHR43113
PANTHER:PTHR43113:SF1	MetaCyc:PWY-5837	SUPFAM:SSF52096	TIGRFAMs:TIGR01929	UniParc:UPI00019D33F5	:

Description

hypothetical protein

Coordinates

chr8:+:39520931..39525766

Molecular Weight (calculated)

37192.0 Da

IEP (calculated)

8.328

GRAVY (calculated)

-0.400

Length

339 amino acids

Sequence
(BLAST)

001: MAENNNNHHL ETATRRLASV TNHLTPSSYH NAPGELAPCL TSGGNNSFRR VHGEVPSHDV VWRIVASDHD NSGKDFTDIV YEKAVGEGIA KISINRPERR
101: NAFRPHTVKE LMRAFTDARD DSSIGVVILT GKGTEAFCSG GDQALRTNDG YSDNGSFSSL NVLDLQVQIR RLPKPVIAMV AGYAVGGGHV LHMVCDLTIA
201: ADNAIFGQTG PKVGSFDAGY GSSIMSRLVG PKKAREMWFL TRFYDAVEAE KMGLVNTVVP LENLEKETIK WCREILRNSP TAIRVLKSAL NAVDDGHSGL
301: QEIGGNATLI YYGTEEAKEG KTAYMQRRRP DFSKFNRRP

Best Arabidopsis Sequence Match ( AT1G60550.1 )
(BLAST)

001: MADSNELGSA SRRLSVVTNH LIPIGFSPAR ADSVELCSAS SMDDRFHKVH GEVPTHEVVW KKTDFFGEGD NKEFVDIIYE KALDEGIAKI TINRPERRNA
101: FRPQTVKELM RAFNDARDDS SVGVIILTGK GTKAFCSGGD QALRTQDGYA DPNDVGRLNV LDLQVQIRRL PKPVIAMVAG YAVGGGHILH MVCDLTIAAD
201: NAIFGQTGPK VGSFDAGYGS SIMSRLVGPK KAREMWFMTR FYTASEAEKM GLINTVVPLE DLEKETVKWC REILRNSPTA IRVLKAALNA VDDGHAGLQG
301: LGGDATLLFY GTEEATEGRT AYMHRRPPDF SKFHRRP

Arabidopsis Description

MENB1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8GYN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.