CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043970_P001	Maize	mitochondrion	94.38	94.94
Os01t0662700-01	Rice	mitochondrion	88.76	90.63
TraesCS3D01G241000.1	Wheat	mitochondrion	88.17	89.76
TraesCS3A01G240600.1	Wheat	mitochondrion	88.17	89.76
TraesCS3B01G268700.1	Wheat	mitochondrion	87.87	89.46
HORVU3Hr1G059840.4	Barley	plastid	86.69	81.39
VIT_01s0127g00420.t01	Wine grape	mitochondrion	75.44	75.89
Solyc05g005180.2.1	Tomato	nucleus	74.85	75.07
PGSC0003DMT400035160	Potato	mitochondrion	75.44	75.0
KRH45650	Soybean	nucleus	74.85	74.63
CDY47214	Canola	cytosol, mitochondrion, peroxisome	72.19	73.94
Bra027150.1-P	Field mustard	cytosol, mitochondrion, peroxisome	73.08	73.08
KRG99357	Soybean	nucleus	72.78	73.0
AT1G60550.1	Thale cress	cytosol	72.19	72.4
CDY53045	Canola	cytosol, mitochondrion, peroxisome	71.89	71.89
GSMUA_Achr4P07830_001	Banana	cytosol, mitochondrion, peroxisome	36.69	62.31
EER94969	Sorghum	peroxisome, plastid	21.6	27.24
KXG34022	Sorghum	peroxisome	21.01	24.15
OQU85735	Sorghum	mitochondrion	21.3	23.84
OQU85737	Sorghum	mitochondrion	20.71	22.95
EES04919	Sorghum	peroxisome	20.12	9.35
EES18080	Sorghum	peroxisome	18.93	8.91
KXG32465	Sorghum	peroxisome	18.34	8.58
EES01597	Sorghum	peroxisome, plasma membrane	3.55	4.01

Protein Annotations

KEGG:00130+4.1.3.36	Gene3D:1.10.12.10	Gene3D:3.90.226.10	MapMan:7.13.4	EntrezGene:8074648	UniProt:C5XUS0
InterPro:ClpP/crotonase-like_dom_sf	InterPro:DHNA-CoA_synthase_MenB	EnsemblPlants:EES06293	ProteinID:EES06293	ProteinID:EES06293.1	InterPro:Enoyl-CoA_hyd/isom_CS
InterPro:Enoyl-CoA_hydra/iso	InterPro:Enoyl-CoA_hydra_C	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0008935
GO:GO:0009058	GO:GO:0009234	GO:GO:0009987	InterPro:IPR014748	HAMAP:MF_01934	PFAM:PF00378
ScanProsite:PS00166	PANTHER:PTHR43113	PANTHER:PTHR43113:SF1	MetaCyc:PWY-5837	EnsemblPlantsGene:SORBI_3004G044200	SUPFAM:SSF52096
unigene:Sbi.7996	TIGRFAMs:TIGR01929	UniParc:UPI0001A859F4	RefSeq:XP_002453317.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:3632033..3634903

Molecular Weight (calculated)

36785.9 Da

IEP (calculated)

9.049

GRAVY (calculated)

-0.272

Length

338 amino acids

Sequence
(BLAST)

001: MGDAAERRLA RVAAHLVPSS SFPVTHATVR PLAPSATAAS SSSSPAKDSY RRVHGDVPSE PPEWRAATDE SGKEFVDIVY EKAVGEGIAK ITINRPNRRN
101: AFRPLTVKEL MRAFNDARDD SSIGVIILTG KGTEAFCSGG DQALRDSDGY VDFDSFGRLN VLDLQVQIRR LPKPVIAMVA GYAVGGGHVL HMVCDITIAA
201: DNAIFGQTGP KVGSFDAGYG SSIMSRLVGP KRAREMWFLS RFYTADEADK MGLVNIVVPL AQLEQETVKW CRQILRNSPM AIRVLKSALN AADDGHAGLQ
301: ELGGNATLIF YGTEEAKEGK NAYMERRRPD FSKFPRKP

Best Arabidopsis Sequence Match ( AT1G60550.1 )
(BLAST)

001: MADSNELGSA SRRLSVVTNH LIPIGFSPAR ADSVELCSAS SMDDRFHKVH GEVPTHEVVW KKTDFFGEGD NKEFVDIIYE KALDEGIAKI TINRPERRNA
101: FRPQTVKELM RAFNDARDDS SVGVIILTGK GTKAFCSGGD QALRTQDGYA DPNDVGRLNV LDLQVQIRRL PKPVIAMVAG YAVGGGHILH MVCDLTIAAD
201: NAIFGQTGPK VGSFDAGYGS SIMSRLVGPK KAREMWFMTR FYTASEAEKM GLINTVVPLE DLEKETVKWC REILRNSPTA IRVLKAALNA VDDGHAGLQG
301: LGGDATLLFY GTEEATEGRT AYMHRRPPDF SKFHRRP

Arabidopsis Description

MENB1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8GYN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.