Factsheet for GSMUA_Achr4P07830_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P07800_001	Banana	mitochondrion	82.41	48.96
Zm00001d043970_P001	Maize	mitochondrion	62.81	37.2
TraesCS3A01G240600.1	Wheat	mitochondrion	61.31	36.75
EES06293	Sorghum	plastid	62.31	36.69
TraesCS3D01G241000.1	Wheat	mitochondrion	60.8	36.45
TraesCS3B01G268700.1	Wheat	mitochondrion	60.8	36.45
Os01t0662700-01	Rice	mitochondrion	59.3	35.65
HORVU3Hr1G059840.4	Barley	plastid	61.81	34.17
GSMUA_Achr8P10700_001	Banana	mitochondrion, peroxisome, plastid	17.59	13.26
GSMUA_Achr11P...	Banana	mitochondrion, peroxisome, plasma membrane	17.09	12.93
GSMUA_Achr7P22470_001	Banana	peroxisome	16.08	11.07
GSMUA_Achr5P18330_001	Banana	mitochondrion	15.58	9.94
GSMUA_Achr7P14420_001	Banana	peroxisome	14.07	3.86
GSMUA_Achr8P19760_001	Banana	peroxisome	14.07	3.83
GSMUA_Achr3P24070_001	Banana	cytosol, peroxisome, plastid	13.07	3.63
GSMUA_Achr2P01720_001	Banana	peroxisome	11.06	3.06
GSMUA_Achr9P20010_001	Banana	peroxisome	0.0	0.0

Protein Annotations

KEGG:00130+4.1.3.36	Gene3D:3.90.226.10	MapMan:35.1	InterPro:ClpP/crotonase-like_dom_sf	InterPro:DHNA-CoA_synthase_MenB	InterPro:Enoyl-CoA_hydra/iso
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0008935
GO:GO:0009058	GO:GO:0009234	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr4G07830_001
EnsemblPlants:GSMUA_Achr4P07830_001	EnsemblPlants:GSMUA_Achr4T07830_001	UniProt:M0SM00	PFAM:PF00378	PANTHER:PTHR43113	PANTHER:PTHR43113:SF1
SUPFAM:SSF52096	TMHMM:TMhelix	UniParc:UPI000294816B	SEG:seg	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_127.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G07830_001]

Coordinates

chr4:-:5825935..5828980

Molecular Weight (calculated)

22108.5 Da

IEP (calculated)

7.865

GRAVY (calculated)

-0.249

Length

199 amino acids

Sequence
(BLAST)

001: MADVSGKDLG TAERRMASIV HHLLPLPPPR LPPIRRSVTS ANDNYRRVHR EVSTREAPWI PACDESGKEY TDTIYEKAVG EGIAKFRSCS HISINHPERR
101: NAFRPNTIKE LICAIWDDNT IGVIILRGKG NEAFCSGGDQ ALRSSDGYAD SESFGHLNVL DLQVQIRRLP KLVIAMVAAG YAVGGGHILH MVCDFYYCF

Best Arabidopsis Sequence Match ( AT1G60550.1 )
(BLAST)

001: MADSNELGSA SRRLSVVTNH LIPIGFSPAR ADSVELCSAS SMDDRFHKVH GEVPTHEVVW KKTDFFGEGD NKEFVDIIYE KALDEGIAKI TINRPERRNA
101: FRPQTVKELM RAFNDARDDS SVGVIILTGK GTKAFCSGGD QALRTQDGYA DPNDVGRLNV LDLQVQIRRL PKPVIAMVAG YAVGGGHILH MVCDLTIAAD
201: NAIFGQTGPK VGSFDAGYGS SIMSRLVGPK KAREMWFMTR FYTASEAEKM GLINTVVPLE DLEKETVKWC REILRNSPTA IRVLKAALNA VDDGHAGLQG
301: LGGDATLLFY GTEEATEGRT AYMHRRPPDF SKFHRRP

Arabidopsis Description

MENB1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8GYN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.