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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plasma membrane

Predictor Summary:
  • cytosol 2
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 4
  • golgi 3
  • peroxisome 4
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome, plasma membrane
Any Predictor:cytosol, peroxisome, secretory
BaCelLo:cytosol
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:secretory
PTS1:peroxisome
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d012590_P001 Maize extracellular 93.65 93.65
Os01t0796400-01 Rice nucleus 88.29 87.42
TraesCS3D01G321200.1 Wheat peroxisome 88.29 86.84
TraesCS3A01G327700.1 Wheat peroxisome 85.95 84.54
TraesCS3B01G357200.1 Wheat peroxisome 88.63 79.82
GSMUA_Achr9P20010_001 Banana peroxisome 71.57 71.81
CDX98542 Canola peroxisome 68.9 71.03
Solyc07g063010.2.1 Tomato nucleus 69.9 70.61
PGSC0003DMT400032309 Potato peroxisome 69.57 70.27
AT3G15290.1 Thale cress cytosol, mitochondrion, peroxisome 68.9 70.07
Bra027263.1-P Field mustard peroxisome 68.56 69.73
KRH55235 Soybean peroxisome 57.86 69.48
VIT_19s0014g02370.t01 Wine grape peroxisome 67.22 67.91
CDX97647 Canola peroxisome 69.57 66.03
KRH55427 Soybean nucleus 69.57 65.2
EES04919 Sorghum peroxisome 29.1 11.97
KXG32465 Sorghum peroxisome 27.76 11.48
EES18080 Sorghum peroxisome 27.09 11.28
HORVU5Hr1G076170.6 Barley plastid 4.68 4.71
OQU85737 Sorghum mitochondrion 4.35 4.26
OQU85735 Sorghum mitochondrion 4.01 3.97
EER94969 Sorghum peroxisome, plastid 3.34 3.73
HORVU6Hr1G021980.6 Barley cytosol 3.34 3.56
EES06293 Sorghum plastid 4.01 3.55
KXG34022 Sorghum peroxisome 2.68 2.72
Protein Annotations
KEGG:00062+4.2.1.17+1.1.1.35KEGG:00071+4.2.1.17+1.1.1.35KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00120+1.1.1.35KEGG:00280+4.2.1.17+1.1.1.35KEGG:00281+4.2.1.17+1.1.1.35
KEGG:00310+4.2.1.17+1.1.1.35KEGG:00360+4.2.1.17KEGG:00362+4.2.1.17+1.1.1.35KEGG:00380+4.2.1.17+1.1.1.35KEGG:00410+4.2.1.17KEGG:00592+4.2.1.17
KEGG:00623+1.1.1.35KEGG:00627+4.2.1.17KEGG:00640+4.2.1.17KEGG:00650+4.2.1.17+1.1.1.35KEGG:00650+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00720+4.2.1.17+1.1.1.35
KEGG:00903+4.2.1.17KEGG:00930+4.2.1.17+1.1.1.35Gene3D:1.10.1040.10InterPro:3-OHacyl-CoA_DHInterPro:3-OHacyl-CoA_DH_CSInterPro:3-OHacyl-CoA_DH_NAD-bd
Gene3D:3.40.50.720MapMan:35.1InterPro:3HC_DH_CInterPro:6-PGluconate_DH-like_C_sfInterPro:6PGD_dom2EntrezGene:8082390
UniProt:C5XME6EnsemblPlants:EES01597ProteinID:EES01597ProteinID:EES01597.1GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0003857GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005777GO:GO:0006629GO:GO:0006631GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016491GO:GO:0055114GO:GO:0070403InterPro:IPR013328InterPro:NAD(P)-bd_dom_sf
PFAM:PF00725PFAM:PF02737PIRSF:PIRSF000105ScanProsite:PS00067PANTHER:PTHR43145PANTHER:PTHR43145:SF4
MetaCyc:PWY-1361MetaCyc:PWY-5109MetaCyc:PWY-5136MetaCyc:PWY-5138MetaCyc:PWY-5177MetaCyc:PWY-5789
MetaCyc:PWY-6435MetaCyc:PWY-6583MetaCyc:PWY-6863MetaCyc:PWY-6883MetaCyc:PWY-6944MetaCyc:PWY-6945
MetaCyc:PWY-6946MetaCyc:PWY-7007MetaCyc:PWY-7046MetaCyc:PWY-7094MetaCyc:PWY-7216MetaCyc:PWY-735
MetaCyc:PWY-7401MetaCyc:PWY-7606MetaCyc:PWY-7654MetaCyc:PWY-7656MetaCyc:PWY-7726MetaCyc:PWY-7778
MetaCyc:PWY-7779MetaCyc:PWY-81EnsemblPlantsGene:SORBI_3003G324000SUPFAM:SSF48179SUPFAM:SSF51735unigene:Sbi.18509
UniParc:UPI0001A84423RefSeq:XP_002456477.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr3:+:65054869..65057062
Molecular Weight (calculated)
31719.8 Da
IEP (calculated)
8.787
GRAVY (calculated)
0.217
Length
299 amino acids
Sequence
(BLAST)
001: MATASEIAAV GVIGAGQMGS GIAQLAAAAG CAVLLLDADP AALSLAVASI SASLRRLAAK GQLSQAACED SIKRIRCVST VQDLRDADLV IEAIVEKEDV
101: KKKLFVELDK ITKSSAILAS NTSSISITRL ASATRRPSQV IGMHFFNPPP IMKLIEIIRG ADTSDEVFAA VKSFSERLGK SVICSQDYPG FIVNRILMPM
201: INEAFWALYT GVATKEDIDT GMKLGTNHPM GPLQLADFIG LDVCLSVLRV LHSGLGDNKY SPCPLLVQYV DAGRLGKKRG VGVYSYGQKS SSVRPKSSM
Best Arabidopsis Sequence Match ( AT3G15290.1 )
(BLAST)
001: MAEMKSVGVV GAGQMGSGIA QLAATSGLDV WLMDADRDAL SRATAAISSS VKRFVSKGLI SKEVGDDAMH RLRLTSNLED LCSADIIVEA IVESEDIKKK
101: LFKDLDGIAK SSAILASNTS SISITRLASA TRRPSQVIGM HFMNPPPIMK LVEIIRGADT SEETFLATKV LAERFGKTTV CSQDYAGFVV NRILMPMINE
201: AFHTLYTGVA TKEDIDSGMK HGTNHPMGPL ELADLIGLDV CLSVMKVLHE GLGDSKYAPC PLLVQYVDAG RLGRKRGVGV YDYREATQKL SPRL
Arabidopsis Description
3-hydroxyacyl-CoA dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LDF5]
SUBAcon: [mitochondrion,peroxisome,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.