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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 2
  • mitochondrion 2
  • peroxisome 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:cytosol
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:mitochondrion
PTS1:peroxisome
TargetP:secretory
WoLF PSORT:nucleus
YLoc:peroxisome
 nucleus: 19621931
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES01597 Sorghum peroxisome, plasma membrane 87.42 88.29
TraesCS3D01G321200.1 Wheat peroxisome 88.74 88.16
Zm00001d012590_P001 Maize extracellular 86.09 86.96
TraesCS3A01G327700.1 Wheat peroxisome 85.76 85.2
TraesCS3B01G357200.1 Wheat peroxisome 89.07 81.02
GSMUA_Achr9P20010_001 Banana peroxisome 70.53 71.48
CDX98542 Canola peroxisome 68.21 71.03
VIT_19s0014g02370.t01 Wine grape peroxisome 68.87 70.27
AT3G15290.1 Thale cress cytosol, mitochondrion, peroxisome 68.21 70.07
Bra027263.1-P Field mustard peroxisome 67.88 69.73
PGSC0003DMT400032309 Potato peroxisome 67.55 68.92
Solyc07g063010.2.1 Tomato nucleus 67.55 68.92
KRH55235 Soybean peroxisome 55.63 67.47
CDX97647 Canola peroxisome 68.54 65.71
KRH55427 Soybean nucleus 67.22 63.64
Os02t0274100-01 Rice plasma membrane 29.8 12.4
Os01t0348600-01 Rice cytosol 27.48 11.42
Os05t0155000-01 Rice peroxisome 26.49 11.05
Os05t0362100-01 Rice cytosol, mitochondrion, peroxisome 15.56 10.11
Os02t0654000-01 Rice mitochondrion 5.96 6.12
Os02t0654100-01 Rice mitochondrion 4.64 4.67
HORVU5Hr1G076170.6 Barley plastid 4.3 4.38
Os03t0310400-01 Rice extracellular, nucleus, plasma membrane 3.64 4.1
Os01t0925200-01 Rice nucleus, plasma membrane 3.64 3.78
HORVU6Hr1G021980.6 Barley cytosol 3.31 3.56
Os01t0662700-01 Rice mitochondrion 3.31 3.02
Protein Annotations
KEGG:00062+4.2.1.17+1.1.1.35KEGG:00071+4.2.1.17+1.1.1.35KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00120+1.1.1.35KEGG:00280+4.2.1.17+1.1.1.35KEGG:00281+4.2.1.17+1.1.1.35
KEGG:00310+4.2.1.17+1.1.1.35KEGG:00360+4.2.1.17KEGG:00362+4.2.1.17+1.1.1.35KEGG:00380+4.2.1.17+1.1.1.35KEGG:00410+4.2.1.17KEGG:00592+4.2.1.17
KEGG:00623+1.1.1.35KEGG:00627+4.2.1.17KEGG:00640+4.2.1.17KEGG:00650+4.2.1.17+1.1.1.35KEGG:00650+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00720+4.2.1.17+1.1.1.35
KEGG:00903+4.2.1.17KEGG:00930+4.2.1.17+1.1.1.35Gene3D:1.10.1040.10InterPro:3-OHacyl-CoA_DHInterPro:3-OHacyl-CoA_DH_CSInterPro:3-OHacyl-CoA_DH_NAD-bd
Gene3D:3.40.50.720MapMan:35.1InterPro:3HC_DH_CEntrezGene:4325632InterPro:6-PGluconate_DH-like_C_sfInterPro:6PGD_dom2
EMBL:AK103329ProteinID:BAB89894.1ProteinID:BAF06429.1ProteinID:BAS74758.1ProteinID:EAZ13826.1GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0003857GO:GO:0004165GO:GO:0004300GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005777GO:GO:0006629
GO:GO:0006631GO:GO:0008150GO:GO:0008152GO:GO:0008692GO:GO:0009056GO:GO:0009062
GO:GO:0009987GO:GO:0016491GO:GO:0036125GO:GO:0055114GO:GO:0070403InterPro:IPR013328
InterPro:NAD(P)-bd_dom_sfEnsemblPlantsGene:Os01g0796400EnsemblPlants:Os01t0796400-01PFAM:PF00725PFAM:PF02737PIRSF:PIRSF000105
ScanProsite:PS00067PANTHER:PTHR43145PANTHER:PTHR43145:SF4UniProt:Q8S1G9SUPFAM:SSF48179SUPFAM:SSF51735
UniParc:UPI00000A8F95RefSeq:XP_015621276.1SEG:seg:::
Description
NAD(P)-binding domain containing protein. (Os01t0796400-01);Similar to 3-hydroxybutyryl-CoA dehydrogenase. (Os01t0796400-02)
Coordinates
chr1:+:33730378..33733010
Molecular Weight (calculated)
32434.5 Da
IEP (calculated)
8.474
GRAVY (calculated)
0.114
Length
302 amino acids
Sequence
(BLAST)
001: MATQATAREI AVVGVIGAGQ MGSGIAQLAA AAGCGVLLLD SDTAALSRAV DSISSSLRRL VAKGQLSQAS CEHSIEQIKC VSSVQELRDA DLVIEAIVES
101: EDIKKKLFVE LDKITKPSAI LASNTSSISI TRLASATNRP CQVIGMHFFN PPPIMKLIEI IRGADTSEEV FTKVKSFSER LGKTVICSQD YPGFIVNRIL
201: MPMINEAFWA LYTGVATKED IDTGMKLGTN HPMGPLQLAD FIGLDVCLSV LRVLHNGLGD SKYSPCPLLV QYVDAGRLGK KRGQGVYSYR TRSSSIKPRS
301: SL
Best Arabidopsis Sequence Match ( AT3G15290.1 )
(BLAST)
001: MAEMKSVGVV GAGQMGSGIA QLAATSGLDV WLMDADRDAL SRATAAISSS VKRFVSKGLI SKEVGDDAMH RLRLTSNLED LCSADIIVEA IVESEDIKKK
101: LFKDLDGIAK SSAILASNTS SISITRLASA TRRPSQVIGM HFMNPPPIMK LVEIIRGADT SEETFLATKV LAERFGKTTV CSQDYAGFVV NRILMPMINE
201: AFHTLYTGVA TKEDIDSGMK HGTNHPMGPL ELADLIGLDV CLSVMKVLHE GLGDSKYAPC PLLVQYVDAG RLGRKRGVGV YDYREATQKL SPRL
Arabidopsis Description
3-hydroxyacyl-CoA dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LDF5]
SUBAcon: [mitochondrion,peroxisome,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.