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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 2
  • peroxisome 3
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, peroxisome, plastid
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:mitochondrion
PTS1:peroxisome
WoLF PSORT:plastid
YLoc:mitochondrion
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH55235 Soybean peroxisome 74.92 95.98
VIT_19s0014g02370.t01 Wine grape peroxisome 71.16 76.69
CDX98542 Canola peroxisome 68.34 75.17
AT3G15290.1 Thale cress cytosol, mitochondrion, peroxisome 68.65 74.49
Solyc07g063010.2.1 Tomato nucleus 68.97 74.32
Bra027263.1-P Field mustard peroxisome 68.03 73.81
PGSC0003DMT400032309 Potato peroxisome 68.03 73.31
GSMUA_Achr9P20010_001 Banana peroxisome 66.14 70.81
TraesCS3A01G327700.1 Wheat peroxisome 66.46 69.74
EES01597 Sorghum peroxisome, plasma membrane 65.2 69.57
CDX97647 Canola peroxisome 68.65 69.52
TraesCS3D01G321200.1 Wheat peroxisome 65.52 68.75
Zm00001d012590_P001 Maize extracellular 63.95 68.23
Os01t0796400-01 Rice nucleus 63.64 67.22
TraesCS3B01G357200.1 Wheat peroxisome 66.14 63.55
KRH25463 Soybean extracellular 5.96 22.35
KRH50819 Soybean cytosol, extracellular, peroxisome 4.08 18.06
KRH39301 Soybean endoplasmic reticulum, mitochondrion, nucleus 27.27 12.02
KRH48371 Soybean nucleus 26.96 11.88
KRH02268 Soybean nucleus 25.71 11.36
KRH50818 Soybean nucleus 25.39 11.19
KRH02269 Soybean peroxisome 24.45 10.79
KRH50717 Soybean mitochondrion, peroxisome 3.76 10.34
KRG94502 Soybean peroxisome 5.96 8.19
HORVU5Hr1G076170.6 Barley plastid 4.7 5.05
KRH02364 Soybean peroxisome 4.08 4.91
KRH57489 Soybean mitochondrion 4.7 4.87
KRH04196 Soybean mitochondrion 4.7 4.78
KRH66641 Soybean peroxisome 3.76 4.4
HORVU6Hr1G021980.6 Barley cytosol 3.45 3.91
KRG99357 Soybean nucleus 3.45 3.26
KRH45650 Soybean nucleus 3.13 2.95
KRH50718 Soybean plastid 0.31 0.6
Protein Annotations
KEGG:00062+4.2.1.17+1.1.1.35KEGG:00071+4.2.1.17+1.1.1.35KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00120+1.1.1.35KEGG:00280+4.2.1.17+1.1.1.35KEGG:00281+4.2.1.17+1.1.1.35
KEGG:00310+4.2.1.17+1.1.1.35KEGG:00360+4.2.1.17KEGG:00362+4.2.1.17+1.1.1.35KEGG:00380+4.2.1.17+1.1.1.35KEGG:00410+4.2.1.17KEGG:00592+4.2.1.17
KEGG:00623+1.1.1.35KEGG:00627+4.2.1.17KEGG:00640+4.2.1.17KEGG:00650+4.2.1.17+1.1.1.35KEGG:00650+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00720+4.2.1.17+1.1.1.35
KEGG:00903+4.2.1.17KEGG:00930+4.2.1.17+1.1.1.35Gene3D:1.10.1040.10EntrezGene:100170753InterPro:3-OHacyl-CoA_DHInterPro:3-OHacyl-CoA_DH_CS
InterPro:3-OHacyl-CoA_DH_NAD-bdGene3D:3.40.50.720MapMan:35.1InterPro:3HC_DH_CInterPro:6-PGluconate_DH-like_C_sfInterPro:6PGD_dom2
EMBL:AB331959EMBL:ACUP02004004UniProt:B0M194EnsemblPlantsGene:GLYMA_06G254700GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0003857GO:GO:0005488GO:GO:0006629GO:GO:0006631GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016491GO:GO:0055114GO:GO:0070403InterPro:IPR013328
EnsemblPlants:KRH55427ProteinID:KRH55427ProteinID:KRH55427.1InterPro:NAD(P)-bd_dom_sfPFAM:PF00725PFAM:PF02737
PIRSF:PIRSF000105ScanProsite:PS00067PANTHER:PTHR43145PANTHER:PTHR43145:SF4MetaCyc:PWY-1361MetaCyc:PWY-5109
MetaCyc:PWY-5136MetaCyc:PWY-5138MetaCyc:PWY-5177MetaCyc:PWY-5789MetaCyc:PWY-6435MetaCyc:PWY-6583
MetaCyc:PWY-6863MetaCyc:PWY-6883MetaCyc:PWY-6944MetaCyc:PWY-6945MetaCyc:PWY-6946MetaCyc:PWY-7007
MetaCyc:PWY-7046MetaCyc:PWY-7094MetaCyc:PWY-7216MetaCyc:PWY-735MetaCyc:PWY-7401MetaCyc:PWY-7606
MetaCyc:PWY-7654MetaCyc:PWY-7656MetaCyc:PWY-7726MetaCyc:PWY-7778MetaCyc:PWY-7779MetaCyc:PWY-81
SUPFAM:SSF48179SUPFAM:SSF51735UniParc:UPI000165BB4FSEG:seg::
Description
hypothetical protein
Coordinates
chr6:-:43391139..43394193
Molecular Weight (calculated)
34998.6 Da
IEP (calculated)
10.006
GRAVY (calculated)
-0.139
Length
319 amino acids
Sequence
(BLAST)
001: MKAKPSYHHH HRRTTTEEKR KRKMLEVKRI GVVGSGQMGS GIAQVAAMHG IDVWLHDLDP QALSKASSSI SSSINRFVSK NHISQVAGAD ALKRLRLTTD
101: LEDLQLADLI IEAIVESEDV KKSLFAQLDR IAKSSAILAS NTSSISVTRL ATSTSRPRQV IGMHFMNPPP VMKLIEIVRG ADTSEETFVA TKALSERLGK
201: VVITSHDYSG FIVNRILMPM INEAFFALYT GVATKEDIDT GMKLGTNHPM GPLELADFIG LDVCLSIMRV LHAGLGDNKY APCPLLVQYV DAGRLGRKRG
301: IGVYEYSKDP RSTKSSSRL
Best Arabidopsis Sequence Match ( AT3G15290.1 )
(BLAST)
001: MAEMKSVGVV GAGQMGSGIA QLAATSGLDV WLMDADRDAL SRATAAISSS VKRFVSKGLI SKEVGDDAMH RLRLTSNLED LCSADIIVEA IVESEDIKKK
101: LFKDLDGIAK SSAILASNTS SISITRLASA TRRPSQVIGM HFMNPPPIMK LVEIIRGADT SEETFLATKV LAERFGKTTV CSQDYAGFVV NRILMPMINE
201: AFHTLYTGVA TKEDIDSGMK HGTNHPMGPL ELADLIGLDV CLSVMKVLHE GLGDSKYAPC PLLVQYVDAG RLGRKRGVGV YDYREATQKL SPRL
Arabidopsis Description
3-hydroxyacyl-CoA dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LDF5]
SUBAcon: [mitochondrion,peroxisome,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.