CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45650	Soybean	nucleus	94.36	93.81
CDY47214	Canola	cytosol, mitochondrion, peroxisome	73.29	74.85
VIT_01s0127g00420.t01	Wine grape	mitochondrion	74.48	74.7
AT1G60550.1	Thale cress	cytosol	74.18	74.18
TraesCS3D01G241000.1	Wheat	mitochondrion	72.7	73.8
TraesCS3A01G240600.1	Wheat	mitochondrion	72.7	73.8
Os01t0662700-01	Rice	mitochondrion	72.4	73.72
TraesCS3B01G268700.1	Wheat	mitochondrion	72.4	73.49
EES06293	Sorghum	plastid	73.0	72.78
Zm00001d043970_P001	Maize	mitochondrion	72.4	72.62
Bra027150.1-P	Field mustard	cytosol, mitochondrion, peroxisome	72.7	72.49
CDY53045	Canola	cytosol, mitochondrion, peroxisome	72.4	72.19
Solyc05g005180.2.1	Tomato	nucleus	72.11	72.11
PGSC0003DMT400035160	Potato	mitochondrion	72.7	72.06
GSMUA_Achr4P07800_001	Banana	mitochondrion	70.92	71.34
HORVU3Hr1G059840.4	Barley	plastid	73.29	68.61
KRH02364	Soybean	peroxisome	20.47	26.04
KRH50718	Soybean	plastid	12.46	25.3
KRH66641	Soybean	peroxisome	19.58	24.18
KRH04196	Soybean	mitochondrion	22.26	23.89
KRH50717	Soybean	mitochondrion, peroxisome	8.01	23.28
KRH57489	Soybean	mitochondrion	21.07	23.05
KRG94502	Soybean	peroxisome	8.01	11.64
KRH39301	Soybean	endoplasmic reticulum, mitochondrion, nucleus	20.77	9.67
KRH48371	Soybean	nucleus	20.47	9.53
KRH02269	Soybean	peroxisome	19.29	8.99
KRH50818	Soybean	nucleus	19.29	8.98
KRH02268	Soybean	nucleus	18.99	8.86
KRH50819	Soybean	cytosol, extracellular, peroxisome	1.19	5.56
KRH55235	Soybean	peroxisome	2.67	3.61
KRH25463	Soybean	extracellular	0.89	3.53
KRH55427	Soybean	nucleus	3.26	3.45

Protein Annotations

KEGG:00130+4.1.3.36	Gene3D:1.10.12.10	EntrezGene:100782743	Gene3D:3.90.226.10	MapMan:7.13.4	EMBL:ACUP02011040
InterPro:ClpP/crotonase-like_dom_sf	InterPro:DHNA-CoA_synthase_MenB	InterPro:Enoyl-CoA_hyd/isom_CS	InterPro:Enoyl-CoA_hydra/iso	InterPro:Enoyl-CoA_hydra_C	EnsemblPlantsGene:GLYMA_18G139700
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008935	GO:GO:0009058
GO:GO:0009234	GO:GO:0009987	InterPro:IPR014748	UniProt:K7MS06	EnsemblPlants:KRG99357	ProteinID:KRG99357
ProteinID:KRG99357.1	HAMAP:MF_01934	PFAM:PF00378	ScanProsite:PS00166	PANTHER:PTHR43113	PANTHER:PTHR43113:SF1
MetaCyc:PWY-5837	SUPFAM:SSF52096	TIGRFAMs:TIGR01929	UniParc:UPI000233E9B2	:	:

Description

hypothetical protein

Coordinates

chr18:-:20977315..20981428

Molecular Weight (calculated)

37035.0 Da

IEP (calculated)

8.875

GRAVY (calculated)

-0.361

Length

337 amino acids

Sequence
(BLAST)

001: MAENNNHHHF GTAIRRLASV TNHLTSSHNA PGELALCRTS GRSDSFHRVQ GHVPSHDVVW RIIASDHDNS GKDFTDIVYE KAVGEGIAKI SINRPERRNA
101: FRPHTVKELM RAFTDAREDS SIGVVILTGK GTEAFCSGGD QALRTDNGYS DNGSFSSLNV LDLQVQIRRL PKPVIAMVAG YAVGGGHVLH MVCDLTIAAD
201: NAIFGQTGPK VGSFDAGFGS SIMSRLVGPK KAREMWFLTR FYDAVEAEKM GLVNTVVPLE NLEKETIKWC REILRNSPTA IRVLKSALNA VDDGHSGLQE
301: IGGNATLIYY GTEEAKEGKT AYLQRRRPDF SKFNRRP

Best Arabidopsis Sequence Match ( AT1G60550.1 )
(BLAST)

001: MADSNELGSA SRRLSVVTNH LIPIGFSPAR ADSVELCSAS SMDDRFHKVH GEVPTHEVVW KKTDFFGEGD NKEFVDIIYE KALDEGIAKI TINRPERRNA
101: FRPQTVKELM RAFNDARDDS SVGVIILTGK GTKAFCSGGD QALRTQDGYA DPNDVGRLNV LDLQVQIRRL PKPVIAMVAG YAVGGGHILH MVCDLTIAAD
201: NAIFGQTGPK VGSFDAGYGS SIMSRLVGPK KAREMWFMTR FYTASEAEKM GLINTVVPLE DLEKETVKWC REILRNSPTA IRVLKAALNA VDDGHAGLQG
301: LGGDATLLFY GTEEATEGRT AYMHRRPPDF SKFHRRP

Arabidopsis Description

MENB1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8GYN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.