Factsheet for Solyc05g005180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
peroxisome 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035160	Potato	mitochondrion	97.92	97.06
CDY47214	Canola	cytosol, mitochondrion, peroxisome	78.04	79.7
Bra027150.1-P	Field mustard	cytosol, mitochondrion, peroxisome	79.23	78.99
GSMUA_Achr4P07800_001	Banana	mitochondrion	78.34	78.81
CDY53045	Canola	cytosol, mitochondrion, peroxisome	78.34	78.11
VIT_01s0127g00420.t01	Wine grape	mitochondrion	77.74	77.98
AT1G60550.1	Thale cress	cytosol	77.15	77.15
Zm00001d043970_P001	Maize	mitochondrion	76.56	76.79
TraesCS3B01G268700.1	Wheat	mitochondrion	75.07	76.2
TraesCS3D01G241000.1	Wheat	mitochondrion	74.78	75.9
TraesCS3A01G240600.1	Wheat	mitochondrion	74.78	75.9
Os01t0662700-01	Rice	mitochondrion	74.18	75.53
EES06293	Sorghum	plastid	75.07	74.85
KRH45650	Soybean	nucleus	73.59	73.16
KRG99357	Soybean	nucleus	72.11	72.11
HORVU3Hr1G059840.4	Barley	plastid	75.07	70.28
Solyc01g059830.2.1	Tomato	nucleus, plastid	22.26	28.3
Solyc05g024240.2.1	Tomato	nucleus	16.32	23.71
Solyc08g078130.2.1	Tomato	mitochondrion	21.36	23.15
Solyc08g068390.2.1	Tomato	peroxisome	20.77	9.86
Solyc12g007170.1.1	Tomato	plastid	20.77	9.67
Solyc07g019670.2.1	Tomato	plastid	20.47	9.54
Solyc12g099440.1.1	Tomato	nucleus	17.21	7.98
Solyc06g009160.2.1	Tomato	cytosol	16.62	7.65
Solyc01g066620.2.1	Tomato	plastid	15.73	7.43
Solyc07g063010.2.1	Tomato	nucleus	3.56	4.05

Protein Annotations

KEGG:00130+4.1.3.36	Gene3D:1.10.12.10	Gene3D:3.90.226.10	MapMan:7.13.4	InterPro:ClpP/crotonase-like_dom_sf	InterPro:DHNA-CoA_synthase_MenB
InterPro:Enoyl-CoA_hyd/isom_CS	InterPro:Enoyl-CoA_hydra/iso	InterPro:Enoyl-CoA_hydra_C	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152
GO:GO:0008935	GO:GO:0009058	GO:GO:0009234	GO:GO:0009987	InterPro:IPR014748	UniProt:K4BW49
HAMAP:MF_01934	PFAM:PF00378	ScanProsite:PS00166	PANTHER:PTHR43113	PANTHER:PTHR43113:SF1	SUPFAM:SSF52096
EnsemblPlantsGene:Solyc05g005180.2	EnsemblPlants:Solyc05g005180.2.1	TIGRFAMs:TIGR01929	UniParc:UPI0002766C39	SEG:seg	:

Description

1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal [Source:Projected from Arabidopsis thaliana (AT1G60550) UniProtKB/Swiss-Prot;Acc:Q8GYN9]

Coordinates

chr5:+:164806..168556

Molecular Weight (calculated)

37082.3 Da

IEP (calculated)

7.998

GRAVY (calculated)

-0.296

Length

337 amino acids

Sequence
(BLAST)

001: MIEEDLNTMR RRVASVANHL LPIPLAQNVF SSIGFSNCSS SSMNDNYHKI HGEVPNHEPV WRLIPSDDES GKDFTDIIYE KAVGEPIAKI TINRPDRRNA
101: FRPHTIKELI RAFNDARDDG SVGVIILTGK GTKAFCSGGD QALRSKDGYA DFESFGRLNV LDLQVQIRRL PKPVIAMVAG YAVGGGHILH MVCDLTIAAD
201: NAIFGQTGPK VGSFDAGYGS SIMSRLVGPK KAREMWFLTR FYTASEAEKM GLVNTVVPVD KLEAETIKWC REILRNSPTA IRVLKSALNA VDDGHAGLQG
301: LGGDATLLFY GTEEGNEGKN AYNERRRPDF SKFPRLP

Best Arabidopsis Sequence Match ( AT1G60550.1 )
(BLAST)

001: MADSNELGSA SRRLSVVTNH LIPIGFSPAR ADSVELCSAS SMDDRFHKVH GEVPTHEVVW KKTDFFGEGD NKEFVDIIYE KALDEGIAKI TINRPERRNA
101: FRPQTVKELM RAFNDARDDS SVGVIILTGK GTKAFCSGGD QALRTQDGYA DPNDVGRLNV LDLQVQIRRL PKPVIAMVAG YAVGGGHILH MVCDLTIAAD
201: NAIFGQTGPK VGSFDAGYGS SIMSRLVGPK KAREMWFMTR FYTASEAEKM GLINTVVPLE DLEKETVKWC REILRNSPTA IRVLKAALNA VDDGHAGLQG
301: LGGDATLLFY GTEEATEGRT AYMHRRPPDF SKFHRRP

Arabidopsis Description

MENB1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8GYN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.