Factsheet for Solyc01g059830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

cytosol 3
peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
PTS1:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003039	Potato	cytosol	97.36	97.36
VIT_05s0077g00860.t01	Wine grape	peroxisome, plastid	75.47	75.19
KRH02364	Soybean	peroxisome	72.45	72.45
KRH50717	Soybean	mitochondrion, peroxisome	30.94	70.69
Bra012731.1-P	Field mustard	cytosol, peroxisome, plasma membrane	68.68	70.27
CDX90535	Canola	peroxisome	68.68	70.27
CDY09705	Canola	cytosol, mitochondrion, peroxisome	68.68	70.27
AT4G16210.1	Thale cress	peroxisome	69.06	69.06
GSMUA_Achr11P...	Banana	mitochondrion, peroxisome, plasma membrane	66.04	66.54
KRH50718	Soybean	plastid	41.51	66.27
GSMUA_Achr8P10700_001	Banana	mitochondrion, peroxisome, plastid	64.53	64.77
EER94969	Sorghum	peroxisome, plastid	64.91	64.18
Zm00001d028909_P001	Maize	extracellular, mitochondrion	64.15	63.2
Os03t0310400-01	Rice	extracellular, nucleus, plasma membrane	63.77	63.06
HORVU4Hr1G053180.1	Barley	peroxisome	63.02	62.31
TraesCS4A01G122800.1	Wheat	peroxisome	62.26	61.57
TraesCS4B01G182600.1	Wheat	peroxisome	62.26	61.57
TraesCS4D01G183100.1	Wheat	peroxisome	61.89	61.19
Solyc05g024240.2.1	Tomato	nucleus	24.91	28.45
Solyc05g005180.2.1	Tomato	nucleus	28.3	22.26
Solyc08g078130.2.1	Tomato	mitochondrion	24.91	21.22
Solyc06g009160.2.1	Tomato	cytosol	26.42	9.56
Solyc07g019670.2.1	Tomato	plastid	25.28	9.27
Solyc12g007170.1.1	Tomato	plastid	25.28	9.25
Solyc12g099440.1.1	Tomato	nucleus	24.15	8.8
Solyc01g066620.2.1	Tomato	plastid	22.26	8.27
Solyc08g068390.2.1	Tomato	peroxisome	21.89	8.17
Solyc07g063010.2.1	Tomato	nucleus	3.02	2.7

Protein Annotations

EnsemblPlants:Solyc01g059830.2.1	EnsemblPlantsGene:Solyc01g059830.2	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152
InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hydra/iso	PANTHER:PTHR43802	PFAM:PF00378	SEG:seg	SUPFAM:SSF52096
UniParc:UPI0002762138	UniProt:K4AW91	MapMan:35.1	:	:	:

Description

Probable enoyl-CoA hydratase 1, peroxisomal [Source:Projected from Arabidopsis thaliana (AT4G16210) UniProtKB/Swiss-Prot;Acc:Q6NL24]

Coordinates

chr1:-:68574222..68578120

Molecular Weight (calculated)

29374.4 Da

IEP (calculated)

8.319

GRAVY (calculated)

-0.163

Length

265 amino acids

Sequence
(BLAST)

001: MEKSSPEKLI LVTHEAGGIA CITINRPHSL NSLTKSMLTD LARIFKSLDA DDSVRVIILT GSGRSFCSGI DLTAAEDVFK GDFRDMEIDP VFQMEQCRKP
101: IIGAVAGFAV TGGFEISLAC DILVASKDAK FLDTHARFGI FPSWGLSQKL SRIIGPSRAR EVSLTATPIN AEQAERWGLV NYVVDRSELL NKARQIAEAI
201: IKNNQDLVLR YKAVINDGFK HDLTRALALE KERAHEYYDG MGKDYFKKMQ EFIAGRNTSK PSSKL

Best Arabidopsis Sequence Match ( AT4G16210.1 )
(BLAST)

001: MDQTVSENLI QVKKESGGIA VITINRPKSL NSLTRAMMVD LAKAFKDMDS DESVQVVIFT GSGRSFCSGV DLTAAESVFK GDVKDPETDP VVQMERLRKP
101: IIGAINGFAI TAGFELALAC DILVASRGAK FMDTHARFGI FPSWGLSQKL SRIIGANKAR EVSLTSMPLT ADVAGKLGFV NHVVEEGEAL KKAREIAEAI
201: IKNEQGMVLR IKSVINDGLK LDLGHALTLE KERAHAYYSG MTKEQFRKMQ EFIAGRGSKK PSSKL

Arabidopsis Description

ECHIAProbable enoyl-CoA hydratase 1, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q6NL24]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.