Factsheet for Os03t0310400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, nucleus

Predictor Summary:

cytosol 1
peroxisome 5
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
extracellular: 24083427
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G053180.1	Barley	peroxisome	89.18	89.18
TraesCS4A01G122800.1	Wheat	peroxisome	89.18	89.18
TraesCS4D01G183100.1	Wheat	peroxisome	88.81	88.81
EER94969	Sorghum	peroxisome, plastid	88.06	88.06
TraesCS4B01G182600.1	Wheat	peroxisome	88.06	88.06
Zm00001d028909_P001	Maize	extracellular, mitochondrion	86.94	86.62
GSMUA_Achr8P10700_001	Banana	mitochondrion, peroxisome, plastid	75.75	76.89
GSMUA_Achr11P...	Banana	mitochondrion, peroxisome, plasma membrane	74.25	75.67
VIT_05s0077g00860.t01	Wine grape	peroxisome, plastid	72.76	73.31
KRH02364	Soybean	peroxisome	67.16	67.92
AT4G16210.1	Thale cress	peroxisome	66.79	67.55
CDY09705	Canola	cytosol, mitochondrion, peroxisome	64.93	67.18
Bra012731.1-P	Field mustard	cytosol, peroxisome, plasma membrane	64.55	66.8
CDX90535	Canola	peroxisome	64.55	66.8
KRH50717	Soybean	mitochondrion, peroxisome	28.73	66.38
PGSC0003DMT400003039	Potato	cytosol	64.55	65.28
KRH50718	Soybean	plastid	39.55	63.86
Solyc01g059830.2.1	Tomato	nucleus, plastid	63.06	63.77
Os02t0654000-01	Rice	mitochondrion	25.0	22.79
Os02t0654100-01	Rice	mitochondrion	25.37	22.67
Os01t0925200-01	Rice	nucleus, plasma membrane	23.51	21.65
Os01t0662700-01	Rice	mitochondrion	25.75	20.85
Os05t0362100-01	Rice	cytosol, mitochondrion, peroxisome	18.66	10.75
Os02t0274100-01	Rice	plasma membrane	24.63	9.09
Os01t0348600-01	Rice	cytosol	23.88	8.8
Os05t0155000-01	Rice	peroxisome	23.13	8.56
Os01t0796400-01	Rice	nucleus	4.1	3.64

Protein Annotations

Gene3D:3.90.226.10	MapMan:35.1	ProteinID:ABF95571.1	ProteinID:BAF11829.1	ProteinID:BAS83854.1	InterPro:ClpP/crotonase-like_dom_sf
ProteinID:EAZ26685.1	InterPro:Enoyl-CoA_hydra/iso	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0016853
EnsemblPlantsGene:Os03g0310400	EnsemblPlants:Os03t0310400-01	PFAM:PF00378	PANTHER:PTHR43802	UniProt:Q10MF8	SUPFAM:SSF52096
UniParc:UPI0000DB4998	SEG:seg	:	:	:	:

Description

Crotonase, core domain containing protein. (Os03t0310400-01)

Coordinates

chr3:+:11068996..11071051

Molecular Weight (calculated)

28891.1 Da

IEP (calculated)

8.741

GRAVY (calculated)

0.029

Length

268 amino acids

Sequence
(BLAST)

001: MAATSPDSGD LILVEPAKPG SRVAVVTINR PKALNALTRP MMVSLAAAFR RLDADDGVAA VVLAGRGRAF CSGVDLTAAE EVFKGDVKDP AADPVVQMER
101: CRKPIVGAIA GFAVTAGFEI ALACDILVAG RSAKFIDTHA KFGIFPSWGL SQKLSRVIGP NRAREVSLTC MPITAEMAEK WGLVNHIVDD TQVLSKAIEV
201: CEAIARNNRN LVVLYKSVIN DGLQLDLEHA RALEKERAHD YYNGMTKEQF ASMQKFIQGR SSKPPSKL

Best Arabidopsis Sequence Match ( AT4G16210.1 )
(BLAST)

001: MDQTVSENLI QVKKESGGIA VITINRPKSL NSLTRAMMVD LAKAFKDMDS DESVQVVIFT GSGRSFCSGV DLTAAESVFK GDVKDPETDP VVQMERLRKP
101: IIGAINGFAI TAGFELALAC DILVASRGAK FMDTHARFGI FPSWGLSQKL SRIIGANKAR EVSLTSMPLT ADVAGKLGFV NHVVEEGEAL KKAREIAEAI
201: IKNEQGMVLR IKSVINDGLK LDLGHALTLE KERAHAYYSG MTKEQFRKMQ EFIAGRGSKK PSSKL

Arabidopsis Description

ECHIAProbable enoyl-CoA hydratase 1, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q6NL24]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.