Factsheet for Os01t0925200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

nucleus 1
peroxisome 5
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G438100.1	Wheat	peroxisome	86.6	86.9
TraesCS3D01G430300.1	Wheat	peroxisome	85.91	86.21
TraesCS3B01G472000.1	Wheat	peroxisome	85.91	86.21
TraesCS3A01G438000.1	Wheat	peroxisome	85.91	86.21
TraesCS3D01G430400.2	Wheat	peroxisome	85.22	85.52
Zm00001d011971_P001	Maize	mitochondrion, peroxisome	84.54	85.42
KXG34022	Sorghum	peroxisome	85.91	85.03
GSMUA_Achr7P22470_001	Banana	peroxisome	62.2	62.63
CDY43605	Canola	peroxisome	54.98	57.97
AT5G43280.1	Thale cress	peroxisome	54.98	57.55
Bra027479.1-P	Field mustard	peroxisome	54.3	57.25
CDY32958	Canola	peroxisome	53.61	56.52
KRH66641	Soybean	peroxisome	51.55	54.95
VIT_01s0146g00270.t01	Wine grape	peroxisome	50.52	53.45
Solyc05g024240.2.1	Tomato	nucleus	38.49	48.28
Os02t0654100-01	Rice	mitochondrion	28.52	27.67
Os02t0654000-01	Rice	mitochondrion	26.8	26.53
Os03t0310400-01	Rice	extracellular, nucleus, plasma membrane	21.65	23.51
Os01t0662700-01	Rice	mitochondrion	23.37	20.54
Os05t0362100-01	Rice	cytosol, mitochondrion, peroxisome	20.27	12.69
Os02t0274100-01	Rice	plasma membrane	23.02	9.23
Os01t0348600-01	Rice	cytosol	22.34	8.94
Os05t0155000-01	Rice	peroxisome	20.27	8.15
Os01t0796400-01	Rice	nucleus	3.78	3.64

Protein Annotations

Gene3D:1.10.12.10	Gene3D:3.90.226.10	EntrezGene:4327232	MapMan:5.7.3.5.2	EMBL:AK109471	ProteinID:BAB89657.1
ProteinID:BAB90665.1	ProteinID:BAF07168.1	ProteinID:BAS75983.1	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hydra/iso	InterPro:Enoyl-CoA_hydra_C
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0016853	GO:GO:0051750	InterPro:IPR014748
EnsemblPlantsGene:Os01g0925200	EnsemblPlants:Os01t0925200-01	PFAM:PF00378	PANTHER:PTHR43149	PANTHER:PTHR43149:SF1	UniProt:Q8RUL6
SUPFAM:SSF52096	UniParc:UPI000009E754	RefSeq:XP_015629135.1	SEG:seg	:	:

Description

Similar to Enoyl CoA hydratase-like protein. (Os01t0925200-01)

Coordinates

chr1:+:40563533..40566329

Molecular Weight (calculated)

30578.1 Da

IEP (calculated)

8.608

GRAVY (calculated)

0.064

Length

291 amino acids

Sequence
(BLAST)

001: MAGSGGGDRG SPEAELRRGF KTLAVTRPDP SAAVYEVRLN RPTRLNALSP DAFAEIPRAM ALLDRAPAAR AVVLSAAGPH FCAGIELGSP GSPATAPSGD
101: PAPAAAEGLR RAILEMQAAL TAIERCRKPV VAAVHGACVG GGVEVVAACD IRCCSKDATF VLREVDMAIV ADLGALQRLP RIVGYGNAAD LALTGRKITA
201: MEAKEMGLVT RVFNSKQELD AGVAKIAKEI SEKSAWAVMG TKAVLLRSRD ITVEQGLEHV ATWNAAMLRS NDLEEAIQAF LEKRKPVFSK L

Best Arabidopsis Sequence Match ( AT5G43280.1 )
(BLAST)

001: MTMESYKTLE IIRKNTDSSV FHLIINRPSH LNALSLDFFI EFPKALSSLD QNPDVSVIIL SGAGKHFCSG IDLNSLSSIS TQSSSGNDRG RSSEQLRRKI
101: KSMQAAITAI EQCRKPVIAA IHGACIGGGV DLITACDIRY CSEDAFFSIK EVDLAIVADL GTLQRLPSIV GYANAMELAL TARRFSGSEA KDLGLVSKVF
201: GSKSELDNGV TTIAEGIGGK SPLAVTGTKA VLLRSREVSV EQGLDYVATW NSAMLISDDL NEAVSAQMMK RKPRFAKL

Arabidopsis Description

DCI1Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9FHR8]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.