CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79511
CDX84701
CDY17140
CDY19452
CDY23766
CDY37750

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43280.1	CDX79511	AT2G33150.1	24879895
AT5G43280.1	CDX84701	AT2G33150.1	24879895
AT5G43280.1	CDY17140	AT2G33150.1	24879895
AT5G43280.1	CDY19452	AT2G33150.1	24879895
AT5G43280.1	CDY23766	AT2G33150.1	24879895
AT5G43280.1	CDY37750	AT2G33150.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32958	Canola	peroxisome	95.29	95.29
AT5G43280.1	Thale cress	peroxisome	88.04	87.41
VIT_01s0146g00270.t01	Wine grape	peroxisome	72.46	72.73
KRH66641	Soybean	peroxisome	65.94	66.67
Solyc05g024240.2.1	Tomato	nucleus	52.54	62.5
TraesCS3D01G430400.2	Wheat	peroxisome	59.42	56.55
TraesCS3D01G430300.1	Wheat	peroxisome	59.42	56.55
TraesCS3B01G472000.1	Wheat	peroxisome	59.42	56.55
TraesCS3A01G438000.1	Wheat	peroxisome	59.42	56.55
TraesCS3A01G438100.1	Wheat	peroxisome	58.7	55.86
Os01t0925200-01	Rice	nucleus, plasma membrane	57.97	54.98
Zm00001d011971_P001	Maize	mitochondrion, peroxisome	56.16	53.82
KXG34022	Sorghum	peroxisome	56.52	53.06
GSMUA_Achr7P22470_001	Banana	peroxisome	54.71	52.25
CDY09705	Canola	cytosol, mitochondrion, peroxisome	22.46	23.94
CDX90535	Canola	peroxisome	22.46	23.94
CDY67750	Canola	mitochondrion	24.64	22.59
CDY47214	Canola	cytosol, mitochondrion, peroxisome	24.64	20.61
CDY53045	Canola	cytosol, mitochondrion, peroxisome	24.64	20.12
CDY05296	Canola	peroxisome	25.0	9.52
CDY24662	Canola	peroxisome	25.0	9.5
CDY34924	Canola	peroxisome	24.64	9.35
CDY08028	Canola	peroxisome	23.91	9.09
CDX74076	Canola	peroxisome	23.55	8.95
CDY35240	Canola	peroxisome	21.74	8.31
CDX97462	Canola	peroxisome	21.38	8.18
CDY06852	Canola	peroxisome	21.38	8.17
CDY66477	Canola	peroxisome	21.01	8.04
CDX92908	Canola	peroxisome	21.01	7.37
CDY69211	Canola	mitochondrion, peroxisome	12.68	5.74
CDX97647	Canola	peroxisome	3.99	3.49
CDX98542	Canola	peroxisome	3.62	3.45

Protein Annotations

Gene3D:1.10.12.10	Gene3D:3.90.226.10	MapMan:5.7.3.5.2	GO:A0A078HYJ9	UniProt:A0A078HYJ9	EnsemblPlants:CDY43605
ProteinID:CDY43605	ProteinID:CDY43605.1	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hyd/isom_CS	InterPro:Enoyl-CoA_hydra/iso	InterPro:Enoyl-CoA_hydra_C
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:GSBRNA2T00076921001	InterPro:IPR014748
PFAM:PF00378	ScanProsite:PS00166	PANTHER:PTHR43149	PANTHER:PTHR43149:SF1	SUPFAM:SSF52096	UniParc:UPI0004EEE2F2
SEG:seg	:	:	:	:	:

Description

BnaC09g17440DBnaC09g17440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYJ9]

Coordinates

chrLK032562:+:133244..134381

Molecular Weight (calculated)

29854.0 Da

IEP (calculated)

8.131

GRAVY (calculated)

-0.007

Length

276 amino acids

Sequence
(BLAST)

001: MDSYKTLEIV RKNTDSSVFH LVLNRPSQLN ALSLDFFDEF PKALSSLDQN PHVSVIILSG AGKHFCSGID LASLSSIADQ SSSGRDRGRS SEGLRRRIKS
101: MQAAITAVEE CRKPVIAAVH GACIGGGVDL VTACDVRYCS EDAFFSIKEV DLAIVADLGT LQRLPRIVGH AKAMELALTA RRFSGCEAKE LGLVSQVFGS
201: KSELDKGVTM IAERIAAKSP LAVTGTKAVL LRSREMSVEQ GLDYVATWNS GMLISDDLNE AVSAQMMKRQ PRFSKL

Best Arabidopsis Sequence Match ( AT5G43280.1 )
(BLAST)

001: MTMESYKTLE IIRKNTDSSV FHLIINRPSH LNALSLDFFI EFPKALSSLD QNPDVSVIIL SGAGKHFCSG IDLNSLSSIS TQSSSGNDRG RSSEQLRRKI
101: KSMQAAITAI EQCRKPVIAA IHGACIGGGV DLITACDIRY CSEDAFFSIK EVDLAIVADL GTLQRLPSIV GYANAMELAL TARRFSGSEA KDLGLVSKVF
201: GSKSELDNGV TTIAEGIGGK SPLAVTGTKA VLLRSREVSV EQGLDYVATW NSAMLISDDL NEAVSAQMMK RKPRFAKL

Arabidopsis Description

DCI1Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9FHR8]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.